Package: flowCut 1.22.0

Justin Meskas

flowCut: Automated Removal of Outlier Events and Flagging of Files Based on Time Versus Fluorescence Analysis

Common techinical complications such as clogging can result in spurious events and fluorescence intensity shifting, flowCut is designed to detect and remove technical artifacts from your data by removing segments that show statistical differences from other segments.

Authors:Justin Meskas [cre, aut], Sherrie Wang [aut]

flowCut_1.22.0.tar.gz
flowCut_1.22.0.zip(r-4.7)flowCut_1.22.0.zip(r-4.6)flowCut_1.22.0.zip(r-4.5)
flowCut_1.22.0.tgz(r-4.6-any)flowCut_1.22.0.tgz(r-4.5-any)
flowCut_1.22.0.tar.gz(r-4.7-any)flowCut_1.22.0.tar.gz(r-4.6-any)
flowCut_1.22.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
flowCut/json (API)
NEWS

# Install 'flowCut' in R:
install.packages('flowCut', repos = c('https://bioc-release.r-universe.dev', 'https://cloud.r-project.org'))
Datasets:
  • flowCutData - A list containing two GvHD flow frames from flowCore

On BioConductor:flowCut-1.23.0(bioc 3.24)flowCut-1.22.0(bioc 3.23)

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

flowcytometrypreprocessingqualitycontrolcellbasedassays

3.94 score 22 scripts 440 downloads 2 mentions 2 exports 100 dependencies

Last updated from:80c33b6416 (on RELEASE_3_23). Checks:1 WARNING, 9 OK. Indexed: no.

TargetResultTimeFilesSyslog
bioc-checksWARNING170
linux-devel-x86_64OK234
source / vignettesOK198
linux-release-x86_64OK214
macos-release-arm64OK159
macos-oldrel-arm64OK115
windows-develOK184
windows-releaseOK149
windows-oldrelOK156
wasm-releaseOK200

Exports:flowCutremoveLowDensSections

Dependencies:abindbackportsBHBiobaseBiocGenericsbiocmakebitopsbootbroomCairocarcarDatacaToolsclassclicolorspacecowplotcpp11cytolibdeldirDerivdir.expirydoBydplyre1071farverfilelockflowCoreflowDensityflowVizforecastFormulafracdiffgenericsggplot2gluegplotsgtablegtoolshexbinIDPmiscinterpisobandjpegKernSmoothlabelinglatticelatticeExtralifecyclelme4lmtestmagrittrMASSMatrixMatrixModelsmatrixStatsmgcvmicrobenchmarkminqamodelrnlmenloptrnnetnumDerivpbkrtestpillarpkgconfigpngpolyclipproxypurrrquantregR6rbibutilsRColorBrewerRcppRcppArmadilloRcppEigenRdpackreformulasRhdf5librlangRProtoBufLibS4VectorsS7scalesSparseMstringistringrsurvivaltibbletidyrtidyselecttimeDateurcautf8vctrsviridisLitewithrzoo

flowCut: Precise and Accurate Automated Removal of Outlier Events and Flagging of Files Based on Time Versus Fluorescence Analysis

Justin Meskas, Sherrie Wang

Rendered fromflowCut.Rmdusingknitr::rmarkdownon May 29 2026.

Last update: 2022-02-17
Started: 2018-02-02