Package: flowDensity 1.46.0
Mehrnoush Malek
flowDensity: Sequential Flow Cytometry Data Gating
This package provides tools for automated sequential gating analogous to the manual gating strategy based on the density of the data.
Authors:
flowDensity_1.46.0.tar.gz
flowDensity_1.46.0.zip(r-4.7)flowDensity_1.46.0.zip(r-4.6)flowDensity_1.46.0.zip(r-4.5)
flowDensity_1.46.0.tgz(r-4.6-any)flowDensity_1.46.0.tgz(r-4.5-any)
flowDensity_1.46.0.tar.gz(r-4.7-any)flowDensity_1.46.0.tar.gz(r-4.6-any)
flowDensity_1.46.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
flowDensity/json (API)
NEWS
| # Install 'flowDensity' in R: |
| install.packages('flowDensity', repos = c('https://bioc-release.r-universe.dev', 'https://cloud.r-project.org')) |
On BioConductor:flowDensity-1.47.0(bioc 3.24)flowDensity-1.46.0(bioc 3.23)
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
bioinformaticsflowcytometrycellbiologyclusteringcancerflowcytdatadatarepresentationstemcelldensitygating
Last updated from:d3fbcb7417 (on RELEASE_3_23). Checks:1 ERROR, 7 WARNING, 2 OK. Indexed: no.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| bioc-checks | ERROR | 184 | ||
| linux-devel-x86_64 | WARNING | 283 | ||
| source / vignettes | OK | 226 | ||
| linux-release-x86_64 | WARNING | 226 | ||
| macos-release-arm64 | WARNING | 140 | ||
| macos-oldrel-arm64 | WARNING | 109 | ||
| windows-devel | WARNING | 138 | ||
| windows-release | WARNING | 131 | ||
| windows-oldrel | WARNING | 131 | ||
| wasm-release | OK | 168 |
Exports:.trackSlopedeGateflowDensitygetflowFramegetPeaksnmRemovenotSubFrameplotplotDens
Dependencies:abindbackportsBHBiobaseBiocGenericsbiocmakebitopsbootbroomcarcarDatacaToolsclicolorspacecowplotcpp11cytolibdeldirDerivdir.expirydoBydplyrfarverfilelockflowCoreflowVizforecastFormulafracdiffgenericsggplot2gluegplotsgtablegtoolshexbinIDPmiscinterpisobandjpegKernSmoothlabelinglatticelatticeExtralifecyclelme4lmtestmagrittrMASSMatrixMatrixModelsmatrixStatsmgcvmicrobenchmarkminqamodelrnlmenloptrnnetnumDerivpbkrtestpillarpkgconfigpngpolyclippurrrquantregR6rbibutilsRColorBrewerRcppRcppArmadilloRcppEigenRdpackreformulasRhdf5librlangRProtoBufLibS4VectorsS7scalesSparseMstringistringrsurvivaltibbletidyrtidyselecttimeDateurcautf8vctrsviridisLitewithrzoo
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Class '"CellPopulation"' | CellPopulation-class getflowFrame,CellPopulation-method plot,flowFrame,CellPopulation-method |
| 1D density gating method | deGate |
| Methods for Function 'flowDensity' in Package 'flowDensity' | flowDensity,CellPopulation,ANY,logical flowDensity,flowFrame,ANY,logical |
| 'CellPopulation' class accessor. | getflowFrame getflowFrame, CellPopulation-method |
| Finding Peaks | getPeaks |
| Preprocessing helper function for flow cytometry data | nmRemove |
| Removing a subset of a FlowFrame object | notSubFrame |
| Plot flow cytometry data with density-based colors | plot, flowFrame, CellPopulation-method plotDens |
