Package: fourSynergy 1.0.0

Sophie Wind

fourSynergy: Ensemble algorithm for 4C-seq data

fourSynergy is an ensemble algorithm leveraging synergies among the existing 4C-seq algorithms r3C-seq, peakC, r.4cker and fourSig. It uses a weighted voting approach to perform improved interaction calling. fourSynergy supports also differential interaction calling.

Authors:Sophie Wind [aut, cre], Carolin Walter [aut, fnd]

fourSynergy_1.0.0.tar.gz
fourSynergy_1.0.0.zip(r-4.7)fourSynergy_1.0.0.zip(r-4.6)fourSynergy_1.0.0.zip(r-4.5)
fourSynergy_1.0.0.tgz(r-4.6-any)fourSynergy_1.0.0.tgz(r-4.5-any)
fourSynergy_1.0.0.tar.gz(r-4.7-any)fourSynergy_1.0.0.tar.gz(r-4.6-any)
fourSynergy_1.0.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
fourSynergy/json (API)
NEWS

# Install 'fourSynergy' in R:
install.packages('fourSynergy', repos = c('https://bioc-release.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/sophiewind/foursynergy/issues

On BioConductor:fourSynergy-1.1.0(bioc 3.24)fourSynergy-1.0.0(bioc 3.23)

sequencingsoftwaredifferentialpeakcalling

4.70 score 182 downloads 9 exports 139 dependencies

Last updated from:0258f45318 (on RELEASE_3_23). Checks:1 ERROR, 9 OK. Indexed: no.

TargetResultTimeFilesSyslog
bioc-checksERROR320
linux-devel-x86_64OK647
source / vignettesOK463
linux-release-x86_64OK736
macos-release-arm64OK353
macos-oldrel-arm64OK387
windows-develOK607
windows-releaseOK613
windows-oldrelOK593
wasm-releaseOK274

Exports:checkConfigconsensusIacreateIadifferentialAnalysisplotBaseTracksplotConsensusIaplotConsensusTracksplotDiffIaplotIaIndiviualTools

Dependencies:abindAnnotationDbiAnnotationFilteraskpassbackportsbamsignalsbase64encbezierBHBiobaseBiocGenericsBiocIOBiocParallelBiostringsbiovizBasebitbit64bitopsblobBSgenomebslibcachemcheckmatecigarillocliclustercodetoolscolorspacecpp11crayoncurldata.tableDBIDelayedArrayDESeq2dichromatdigestdplyrensembldbevaluatefarverfastmapfontawesomeforeignformatRFormulafsfutile.loggerfutile.optionsgenericsGenomeInfoDbGenomicAlignmentsGenomicFeaturesGenomicRangesggplot2gluegridExtragtablehighrHmischtmlTablehtmltoolshtmlwidgetshttrIRangesisobandjquerylibjsonlitekaryoploteRKEGGRESTknitrlabelinglambda.rlatticelazyevallifecyclelocfitmagrittrMatrixMatrixGenericsmatrixStatsmemoisemimennetopensslorg.Hs.eg.dborg.Mm.eg.dbpillarpkgconfigplyrpngProtGenericspurrrR6rappdirsRColorBrewerRcppRcppArmadilloRCurlregioneRreshape2restfulrRhtslibrjsonrlangrmarkdownrpartRsamtoolsRSQLiterstudioapirtracklayerS4ArraysS4VectorsS7sassscalesSeqinfosnowSparseArraystringistringrSummarizedExperimentsystibbletidyrtidyselecttinytexTxDb.Hsapiens.UCSC.hg19.knownGeneTxDb.Mmusculus.UCSC.mm10.knownGeneUCSC.utilsutf8VariantAnnotationvctrsviridisLitewithrxfunXMLXVectoryaml

fourSynergy

Rendered fromfourSynergy_vignette.Rmdusingknitr::rmarkdownon May 22 2026.

Last update: 2026-03-06
Started: 2025-10-24