Package: frma 1.64.0

Matthew N. McCall

frma: Frozen RMA and Barcode

Preprocessing and analysis for single microarrays and microarray batches.

Authors:Matthew N. McCall <[email protected]>, Rafael A. Irizarry <[email protected]>, with contributions from Terry Therneau

frma_1.64.0.tar.gz
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manual.pdf |manual.html✨
card.svg |card.png
frma/json (API)
NEWS

# Install 'frma' in R:
install.packages('frma', repos = c('https://bioc-release.r-universe.dev', 'https://cloud.r-project.org'))

On BioConductor:frma-1.65.0(bioc 3.24)frma-1.64.0(bioc 3.23)

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

softwaremicroarraypreprocessing

5.90 score 1 packages 133 scripts 482 downloads 26 mentions 12 exports 46 dependencies

Last updated from:36a6abf5a4 (on RELEASE_3_23). Checks:1 ERROR, 7 NOTE, 2 OK. Indexed: no.

TargetResultTimeFilesSyslog
bioc-checksERROR182
linux-devel-x86_64NOTE412
source / vignettesOK266
linux-release-x86_64NOTE303
macos-release-arm64NOTE256
macos-oldrel-arm64NOTE188
windows-develNOTE271
windows-releaseNOTE233
windows-oldrelNOTE188
wasm-releaseOK124

Exports:barcodefrmaGNUSEinitializerandomeffectsrandomeffects<-residualsresiduals<-se.exprsse.exprs<-weightsweights<-

Dependencies:abindaffxparseraffyaffyioBiobaseBiocGenericsBiocManagerBiostringsbitbit64blobcachemclicodetoolscpp11crayonDBIDelayedArrayfastmapffforeachgenericsGenomicRangesglueIRangesiteratorslatticelifecycleMASSMatrixMatrixGenericsmatrixStatsmemoiseoligooligoClassespkgconfigpreprocessCorerlangRSQLiteS4ArraysS4VectorsSeqinfoSparseArraySummarizedExperimentvctrsXVector

frma: Preprocessing for single arrays and array batches

Rendered fromfrma.Rnwusingutils::Sweaveon Jun 02 2026.

Last update: 2015-01-14
Started: 2013-11-01

Readme and manuals

Help Manual

Help pageTopics
Gene Expression Barcodebarcode
Frozen Robust Multi-Array Analysisfrma
Class to Contain and Describe High-Throughput Expression Level Assays preprocessed with fRMAas.ExpressionSet,frmaExpressionSet-method class:frmaExpressionSet frmaExpressionSet frmaExpressionSet-class frmaExpressionSet-methods initialize,frmaExpressionSet-method randomeffects randomeffects,frmaExpressionSet-method randomeffects<- randomeffects<-,frmaExpressionSet-method residuals,frmaExpressionSet-method residuals<- residuals<-,frmaExpressionSet-method se.exprs,ExpressionSet-method se.exprs,frmaExpressionSet-method se.exprs<- se.exprs<-,ExpressionSet-method se.exprs<-,frmaExpressionSet-method weights,frmaExpressionSet-method weights<- weights<-,frmaExpressionSet-method
GNUSEGNUSE