Package: funtooNorm 1.36.0

Kathleen Klein

funtooNorm: Normalization Procedure for Infinium HumanMethylation450 BeadChip Kit

Provides a function to normalize Illumina Infinium Human Methylation 450 BeadChip (Illumina 450K), correcting for tissue and/or cell type.

Authors:Celia Greenwood <[email protected]>,Stepan Grinek <[email protected]>, Maxime Turgeon <[email protected]>, Kathleen Klein <[email protected]>

funtooNorm_1.36.0.tar.gz
funtooNorm_1.36.0.zip(r-4.7-any)funtooNorm_1.36.0.zip(r-4.6-any)funtooNorm_1.36.0.zip(r-4.5-any)
funtooNorm_1.36.0.tgz(r-4.6-any)funtooNorm_1.36.0.tgz(r-4.5-any)
funtooNorm_1.36.0.tar.gz(r-4.7-any)funtooNorm_1.36.0.tar.gz(r-4.6-any)
funtooNorm_1.36.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
funtooNorm/json (API)

# Install 'funtooNorm' in R:
install.packages('funtooNorm', repos = c('https://bioc-release.r-universe.dev', 'https://cloud.r-project.org'))

On BioConductor:funtooNorm-1.37.0(bioc 3.24)funtooNorm-1.36.0(bioc 3.23)

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

dnamethylationpreprocessingnormalization

3.70 score 485 downloads 5 mentions 11 exports 139 dependencies

Last updated from:9526945e7d (on RELEASE_3_23). Checks:1 ERROR, 7 WARNING, 2 OK. Indexed: no.

TargetResultTimeFilesSyslog
bioc-checksERROR294
linux-develWARNING598
source / vignettesOK371
linux-releaseWARNING540
macos-releaseWARNING485
macos-oldrelWARNING444
windows-develWARNING522
windows-releaseWARNING546
windows-oldrelWARNING542
wasm-releaseOK229

Exports:agreementfromGenStudFilesfromRGChannelSetfuntooNormgetGRangesgetNormBetagetNormMgetRawBetagetSnpMplotValidationGraphshow

Dependencies:abindannotateAnnotationDbiaskpassbase64beanplotBHBiobaseBiocGenericsBiocIObiocmakeBiocParallelBiostringsbitbit64bitopsblobbumphuntercachemcigarilloclicliprcodetoolscpp11crayoncurldata.tableDBIDelayedArrayDelayedMatrixStatsdigestdir.expirydoRNGdplyrfastmapfilelockforeachformatRfutile.loggerfutile.optionsgenefiltergenericsGenomeInfoDbGenomicAlignmentsGenomicFeaturesGenomicRangesGEOqueryglueh5mreadHDF5Arrayhmshttrhttr2IlluminaHumanMethylation450kanno.ilmn12.hg19IlluminaHumanMethylation450kmanifestilluminaioIRangesiteratorsjsonliteKEGGRESTlambda.rlatticelifecyclelimmalocfitmagrittrMASSMatrixMatrixGenericsmatrixStatsmclustmemoisemimeminfimulttestnlmenor1mixopensslpillarpkgconfigplsplyrpngpreprocessCoreprettyunitsprogresspurrrquadprogR.methodsS3R.ooR.utilsR6RColorBrewerRcppRCurlreadrrentrezreshaperestfulrrhdf5rhdf5filtersRhdf5libRhtslibrjsonrlangrngtoolsRsamtoolsRSQLitertracklayerrvestS4ArraysS4VectorsscrimeselectrSeqinfosiggenessnowSparseArraysparseMatrixStatsstatmodstringistringrSummarizedExperimentsurvivalsystibbletidyrtidyselecttzdbUCSC.utilsutf8vctrsvroomwithrXMLxml2xtableXVectoryaml