Package: furrowSeg 1.40.0

Joseph Barry

furrowSeg: Furrow Segmentation

Image feature data and analysis codes for the Guglielmi, Barry et al. paper describing the application of an optogenetics tools to disrupt Drosophila embryo furrowing.

Authors:Joseph Barry

furrowSeg_1.40.0.tar.gz
furrowSeg_1.40.0.tar.gz(r-4.7-any)furrowSeg_1.40.0.tar.gz(r-4.6-any)
manual.pdf |manual.html✨
DESCRIPTION
card.svg |card.png
furrowSeg/json (API)

# Install 'furrowSeg' in R:

install.packages('furrowSeg', repos = c('https://bioc-release.r-universe.dev', 'https://cloud.r-project.org'))

Datasets:

exampleFurrowMovie - Example Furrow Movie
opto - Cell Feature Data
sampleTable - Table of image names with metadata

On BioConductor:furrowSeg-1.41.1(data/experiment 3.24)furrowSeg-1.39.0(data/experiment 3.23)

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

experimentdata drosophila_melanogaster_data tissue reproducibleresearch datapkg

2.30 score 12 exports 48 dependencies

Last updated from:f0c762557d (on RELEASE_3_23). Checks:2 ERROR, 2 WARNING. Indexed: no.

This is a data package. Data packages may be large and do not get checked across all platforms.

Target	Result	Time
bioc-checks	ERROR	166
linux-devel	WARNING	289
source / vignettes	ERROR	1330
linux-release	WARNING	257

Exports:area2px constructBox identifyFurrowPosition identifyTimeMinArea isOdd isolateBoxCells makeOdd microns2px plotFeatureEvolution px2area px2microns segmentFurrowAllStacks

Dependencies:abind base64enc BiocGenerics bitops bslib cachem cli digest dplyr EBImage evaluate fastmap fftwtools fontawesome fs generics glue highr htmltools htmlwidgets jpeg jquerylib jsonlite knitr lattice lifecycle locfit magrittr memoise mime pillar pkgconfig png R6 rappdirs RCurl rlang rmarkdown sass tibble tidyselect tiff tinytex utf8 vctrs withr xfun yaml

Vignettes and/or manual for this package failed to build, some documents may be unavailable. Please inspect thebuild logs for more information.

Citation

Development and contributors

Readme and manuals

Help Manual

Help page	Topics
Construct Box	constructBox
Example Furrow Movie	exampleFurrowMovie
Identify Furrow Position	identifyFurrowPosition
Identify Time Point of Tissue Invagination	identifyTimeMinArea
isOdd	isOdd makeOdd
Isolate Box Cells	isolateBoxCells
Cell Feature Data	opto
Plot Feature Evolution	plotFeatureEvolution
px2area	area2px px2area
px2microns	microns2px px2microns
Table of image names with metadata	sampleTable
Cell segmentation of furrow images.	segmentFurrowAllStacks