Package: gVenn 1.2.0

Christophe Tav

gVenn: Proportional Venn and UpSet Diagrams for Gene Sets and Genomic Regions

Tools to compute and visualize overlaps between gene sets or genomic regions. Venn diagrams with proportional areas are provided, while UpSet plots are recommended for larger numbers of sets. The package supports GRanges and GRangesList inputs, and integrates with analysis workflows for ChIP-seq, ATAC-seq, and other genomic interval data. It generates clean, interpretable, and publication-ready figures.

Authors:Christophe Tav [aut, cre]

gVenn_1.2.0.tar.gz
gVenn_1.2.0.zip(r-4.7)gVenn_1.2.0.zip(r-4.6)gVenn_1.2.0.zip(r-4.5)
gVenn_1.2.0.tgz(r-4.6-any)gVenn_1.2.0.tgz(r-4.5-any)
gVenn_1.2.0.tar.gz(r-4.7-any)gVenn_1.2.0.tar.gz(r-4.6-any)
gVenn_1.2.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
gVenn/json (API)
NEWS

# Install 'gVenn' in R:

install.packages('gVenn', repos = c('https://bioc-release.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/ckntav/gvenn/issues

Pkgdown/docs site:https://ckntav.github.io

Datasets:

a549_chipseq_peaks - A549 ChIP-seq Consensus Peak Subsets
gene_list - Example Gene Lists with Overlaps

On BioConductor:gVenn-1.1.1(bioc 3.24)gVenn-1.1.1(bioc 3.23)

software visualization chipseq atacseq epigenetics datarepresentation sequencing

5.10 score 2 stars 14 scripts 239 downloads 8 exports 79 dependencies

Last updated from:9defc4a04e (on RELEASE_3_23). Checks:1 NOTE, 7 ERROR, 2 OK. Indexed: no.

Target	Result	Time
bioc-checks	NOTE	173
linux-devel-x86_64	ERROR	271
source / vignettes	OK	235
linux-release-x86_64	ERROR	200
macos-release-arm64	ERROR	124
macos-oldrel-arm64	ERROR	103
windows-devel	ERROR	160
windows-release	ERROR	213
windows-oldrel	ERROR	150
wasm-release	OK	147

Exports:computeOverlaps exportOverlaps exportOverlapsToBed extractOverlaps plotUpSet plotVenn saveViz today

Dependencies:abind askpass BH Biobase BiocGenerics BiocIO BiocParallel Biostrings bitops cigarillo circlize cli clue cluster codetools colorspace ComplexHeatmap cpp11 crayon curl DelayedArray digest doParallel eulerr foreach formatR futile.logger futile.options generics GenomicAlignments GenomicRanges GenSA GetoptLong GlobalOptions glue httr IRanges iterators jsonlite lambda.r lattice lifecycle lubridate magrittr Matrix MatrixGenerics matrixStats mime openssl png polyclip polylabelr R6 RColorBrewer Rcpp RcppArmadillo RCurl restfulr Rhtslib rjson rlang Rsamtools rtracklayer S4Arrays S4Vectors Seqinfo shape snow SparseArray stringi stringr SummarizedExperiment sys timechange vctrs writexl XML XVector yaml

gVenn: Proportional Venn diagrams for genomic regions and gene set overlaps

Christophe Tav

Rendered fromgVenn.Rmdusingknitr::rmarkdownon May 29 2026.

Last update: 2025-10-29
Started: 2025-08-25

Citation

Development and contributors

Readme and manuals

Help Manual

Help page	Topics
A549 ChIP-seq Consensus Peak Subsets (Dex, chr7)	a549_chipseq_peaks
Compute Overlaps Between Multiple Sets or Genomic Regions	computeOverlaps
Export Overlap Groups to Excel	exportOverlaps
Export Overlap Groups to BED Files	exportOverlapsToBed
Extract Overlap Groups from Genomic or Set Overlap Results	extractOverlaps
Example Gene Lists with Overlaps	gene_list
Plot an UpSet Diagram from Genomic or Set Overlap Results	plotUpSet
Plot a Venn Diagram from Genomic or Set Overlap Results	plotVenn
Save a Visualization to File (PDF, PNG, or SVG)	saveViz
Today's Date at Package Load Time	today