Package: gcatest
Title: Genotype Conditional Association TEST
Version: 2.12.0
Authors@R: c(
    person(given = "Wei",
	   family = "Hao",
	   role = "aut",
	   email = "whao@princeton.edu"),
    person(given = "Minsun",
	   family = "Song",
	   role = "aut"),
    person(given = "Alejandro",
	   family = "Ochoa",
	   role = c("aut", "cre"),
	   email = "alejandro.ochoa@duke.edu",
           comment = c(ORCID = "0000-0003-4928-3403")),
    person(given = "John D.",
           family = "Storey",
	   role = "aut",
	   email = "jstorey@princeton.edu",
           comment = c(ORCID = "0000-0001-5992-402X"))
    )
Encoding: UTF-8
LazyData: true
Description: GCAT is an association test for genome wide association
        studies that controls for population structure under a general
        class of trait models.  This test conditions on the trait,
        which makes it immune to confounding by unmodeled environmental
        factors.  Population structure is modeled via logistic factors,
        which are estimated using the `lfa` package.
Imports: methods, lfa
Depends: R (>= 4.0)
Suggests: knitr, rmarkdown, ggplot2, testthat, BEDMatrix, genio
VignetteBuilder: knitr
License: GPL (>= 3)
biocViews: SNP, DimensionReduction, PrincipalComponent,
        GenomeWideAssociation
BugReports: https://github.com/StoreyLab/gcatest/issues
URL: https://github.com/StoreyLab/gcatest
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.3.3
Config/pak/sysreqs: libx11-dev
Repository: Bioconductor 3.23
Date/Publication: 2026-04-28 13:00:59 UTC
RemoteUrl: https://github.com/bioc/gcatest
RemoteRef: RELEASE_3_23
RemoteSha: 8d8fd1aba5e46ed7f3131dd5349dc8191e8a06ba
NeedsCompilation: no
Packaged: 2026-10-15 07:06:30 UTC; root
Author: Wei Hao [aut],
  Minsun Song [aut],
  Alejandro Ochoa [aut, cre] (ORCID:
    <https://orcid.org/0000-0003-4928-3403>),
  John D. Storey [aut] (ORCID: <https://orcid.org/0000-0001-5992-402X>)
Maintainer: Alejandro Ochoa <alejandro.ochoa@duke.edu>