| Title: | Lengths of mRNA transcripts for a number of genomes |
|---|---|
| Description: | Length of mRNA transcripts for a number of genomes and gene ID formats, largely based on UCSC table browser. Data objects are provided as individual pieces of information to be retrieved and loaded. A variety of different gene identifiers and genomes is supported to ensure wide applicability. |
| Authors: | Matthew Young [aut], Nadia Davidson [aut], Federico Marini [ctb, cre] (ORCID: <https://orcid.org/0000-0003-3252-7758>) |
| Maintainer: | Federico Marini <[email protected]> |
| License: | LGPL (>= 2) |
| Version: | 1.48.0 |
| Built: | 2026-10-10 11:08:32 UTC |
| Source: | https://github.com/bioc/geneLenDataBase |
anoCar1.ensGene.LENGTH is an R object which maps transcripts to the length (in bp) of their mature mRNA transcripts. Where available, it will also provide the mapping between a gene ID and its associated transcripts. The data is obtained from the UCSC table browser (http://genome.ucsc.edu/cgi-bin/hgTables) using the ensGene table.
The data file was made by calling downloadLengthFromUCSC(anoCar1, ensGene) on the date on which the package was last updated.
data(anoCar1.ensGene.LENGTH) head(anoCar1.ensGene.LENGTH)data(anoCar1.ensGene.LENGTH) head(anoCar1.ensGene.LENGTH)
anoCar1.genscan.LENGTH is an R object which maps transcripts to the length (in bp) of their mature mRNA transcripts. Where available, it will also provide the mapping between a gene ID and its associated transcripts. The data is obtained from the UCSC table browser (http://genome.ucsc.edu/cgi-bin/hgTables) using the genscan table.
The data file was made by calling downloadLengthFromUCSC(anoCar1, genscan) on the date on which the package was last updated.
data(anoCar1.genscan.LENGTH) head(anoCar1.genscan.LENGTH)data(anoCar1.genscan.LENGTH) head(anoCar1.genscan.LENGTH)
anoCar1.xenoRefGene.LENGTH is an R object which maps transcripts to the length (in bp) of their mature mRNA transcripts. Where available, it will also provide the mapping between a gene ID and its associated transcripts. The data is obtained from the UCSC table browser (http://genome.ucsc.edu/cgi-bin/hgTables) using the xenoRefGene table.
The data file was made by calling downloadLengthFromUCSC(anoCar1, xenoRefGene) on the date on which the package was last updated.
data(anoCar1.xenoRefGene.LENGTH) head(anoCar1.xenoRefGene.LENGTH)data(anoCar1.xenoRefGene.LENGTH) head(anoCar1.xenoRefGene.LENGTH)
anoGam1.ensGene.LENGTH is an R object which maps transcripts to the length (in bp) of their mature mRNA transcripts. Where available, it will also provide the mapping between a gene ID and its associated transcripts. The data is obtained from the UCSC table browser (http://genome.ucsc.edu/cgi-bin/hgTables) using the ensGene table.
The data file was made by calling downloadLengthFromUCSC(anoGam1, ensGene) on the date on which the package was last updated.
data(anoGam1.ensGene.LENGTH) head(anoGam1.ensGene.LENGTH)data(anoGam1.ensGene.LENGTH) head(anoGam1.ensGene.LENGTH)
anoGam1.geneid.LENGTH is an R object which maps transcripts to the length (in bp) of their mature mRNA transcripts. Where available, it will also provide the mapping between a gene ID and its associated transcripts. The data is obtained from the UCSC table browser (http://genome.ucsc.edu/cgi-bin/hgTables) using the geneid table.
The data file was made by calling downloadLengthFromUCSC(anoGam1, geneid) on the date on which the package was last updated.
data(anoGam1.geneid.LENGTH) head(anoGam1.geneid.LENGTH)data(anoGam1.geneid.LENGTH) head(anoGam1.geneid.LENGTH)
anoGam1.genscan.LENGTH is an R object which maps transcripts to the length (in bp) of their mature mRNA transcripts. Where available, it will also provide the mapping between a gene ID and its associated transcripts. The data is obtained from the UCSC table browser (http://genome.ucsc.edu/cgi-bin/hgTables) using the genscan table.
The data file was made by calling downloadLengthFromUCSC(anoGam1, genscan) on the date on which the package was last updated.
data(anoGam1.genscan.LENGTH) head(anoGam1.genscan.LENGTH)data(anoGam1.genscan.LENGTH) head(anoGam1.genscan.LENGTH)
apiMel1.genscan.LENGTH is an R object which maps transcripts to the length (in bp) of their mature mRNA transcripts. Where available, it will also provide the mapping between a gene ID and its associated transcripts. The data is obtained from the UCSC table browser (http://genome.ucsc.edu/cgi-bin/hgTables) using the genscan table.
The data file was made by calling downloadLengthFromUCSC(apiMel1, genscan) on the date on which the package was last updated.
data(apiMel1.genscan.LENGTH) head(apiMel1.genscan.LENGTH)data(apiMel1.genscan.LENGTH) head(apiMel1.genscan.LENGTH)
apiMel2.ensGene.LENGTH is an R object which maps transcripts to the length (in bp) of their mature mRNA transcripts. Where available, it will also provide the mapping between a gene ID and its associated transcripts. The data is obtained from the UCSC table browser (http://genome.ucsc.edu/cgi-bin/hgTables) using the ensGene table.
The data file was made by calling downloadLengthFromUCSC(apiMel2, ensGene) on the date on which the package was last updated.
data(apiMel2.ensGene.LENGTH) head(apiMel2.ensGene.LENGTH)data(apiMel2.ensGene.LENGTH) head(apiMel2.ensGene.LENGTH)
apiMel2.geneid.LENGTH is an R object which maps transcripts to the length (in bp) of their mature mRNA transcripts. Where available, it will also provide the mapping between a gene ID and its associated transcripts. The data is obtained from the UCSC table browser (http://genome.ucsc.edu/cgi-bin/hgTables) using the geneid table.
The data file was made by calling downloadLengthFromUCSC(apiMel2, geneid) on the date on which the package was last updated.
data(apiMel2.geneid.LENGTH) head(apiMel2.geneid.LENGTH)data(apiMel2.geneid.LENGTH) head(apiMel2.geneid.LENGTH)
apiMel2.genscan.LENGTH is an R object which maps transcripts to the length (in bp) of their mature mRNA transcripts. Where available, it will also provide the mapping between a gene ID and its associated transcripts. The data is obtained from the UCSC table browser (http://genome.ucsc.edu/cgi-bin/hgTables) using the genscan table.
The data file was made by calling downloadLengthFromUCSC(apiMel2, genscan) on the date on which the package was last updated.
data(apiMel2.genscan.LENGTH) head(apiMel2.genscan.LENGTH)data(apiMel2.genscan.LENGTH) head(apiMel2.genscan.LENGTH)
aplCal1.xenoRefGene.LENGTH is an R object which maps transcripts to the length (in bp) of their mature mRNA transcripts. Where available, it will also provide the mapping between a gene ID and its associated transcripts. The data is obtained from the UCSC table browser (http://genome.ucsc.edu/cgi-bin/hgTables) using the xenoRefGene table.
The data file was made by calling downloadLengthFromUCSC(aplCal1, xenoRefGene) on the date on which the package was last updated.
data(aplCal1.xenoRefGene.LENGTH) head(aplCal1.xenoRefGene.LENGTH)data(aplCal1.xenoRefGene.LENGTH) head(aplCal1.xenoRefGene.LENGTH)
bosTau2.geneid.LENGTH is an R object which maps transcripts to the length (in bp) of their mature mRNA transcripts. Where available, it will also provide the mapping between a gene ID and its associated transcripts. The data is obtained from the UCSC table browser (http://genome.ucsc.edu/cgi-bin/hgTables) using the geneid table.
The data file was made by calling downloadLengthFromUCSC(bosTau2, geneid) on the date on which the package was last updated.
data(bosTau2.geneid.LENGTH) head(bosTau2.geneid.LENGTH)data(bosTau2.geneid.LENGTH) head(bosTau2.geneid.LENGTH)
bosTau2.geneSymbol.LENGTH is an R object which maps transcripts to the length (in bp) of their mature mRNA transcripts. Where available, it will also provide the mapping between a gene ID and its associated transcripts. The data is obtained from the UCSC table browser (http://genome.ucsc.edu/cgi-bin/hgTables) using the geneSymbol table.
The data file was made by calling downloadLengthFromUCSC(bosTau2, geneSymbol) on the date on which the package was last updated.
data(bosTau2.geneSymbol.LENGTH) head(bosTau2.geneSymbol.LENGTH)data(bosTau2.geneSymbol.LENGTH) head(bosTau2.geneSymbol.LENGTH)
bosTau2.genscan.LENGTH is an R object which maps transcripts to the length (in bp) of their mature mRNA transcripts. Where available, it will also provide the mapping between a gene ID and its associated transcripts. The data is obtained from the UCSC table browser (http://genome.ucsc.edu/cgi-bin/hgTables) using the genscan table.
The data file was made by calling downloadLengthFromUCSC(bosTau2, genscan) on the date on which the package was last updated.
data(bosTau2.genscan.LENGTH) head(bosTau2.genscan.LENGTH)data(bosTau2.genscan.LENGTH) head(bosTau2.genscan.LENGTH)
bosTau2.refGene.LENGTH is an R object which maps transcripts to the length (in bp) of their mature mRNA transcripts. Where available, it will also provide the mapping between a gene ID and its associated transcripts. The data is obtained from the UCSC table browser (http://genome.ucsc.edu/cgi-bin/hgTables) using the refGene table.
The data file was made by calling downloadLengthFromUCSC(bosTau2, refGene) on the date on which the package was last updated.
data(bosTau2.refGene.LENGTH) head(bosTau2.refGene.LENGTH)data(bosTau2.refGene.LENGTH) head(bosTau2.refGene.LENGTH)
bosTau2.sgpGene.LENGTH is an R object which maps transcripts to the length (in bp) of their mature mRNA transcripts. Where available, it will also provide the mapping between a gene ID and its associated transcripts. The data is obtained from the UCSC table browser (http://genome.ucsc.edu/cgi-bin/hgTables) using the sgpGene table.
The data file was made by calling downloadLengthFromUCSC(bosTau2, sgpGene) on the date on which the package was last updated.
data(bosTau2.sgpGene.LENGTH) head(bosTau2.sgpGene.LENGTH)data(bosTau2.sgpGene.LENGTH) head(bosTau2.sgpGene.LENGTH)
bosTau3.ensGene.LENGTH is an R object which maps transcripts to the length (in bp) of their mature mRNA transcripts. Where available, it will also provide the mapping between a gene ID and its associated transcripts. The data is obtained from the UCSC table browser (http://genome.ucsc.edu/cgi-bin/hgTables) using the ensGene table.
The data file was made by calling downloadLengthFromUCSC(bosTau3, ensGene) on the date on which the package was last updated.
data(bosTau3.ensGene.LENGTH) head(bosTau3.ensGene.LENGTH)data(bosTau3.ensGene.LENGTH) head(bosTau3.ensGene.LENGTH)
bosTau3.geneid.LENGTH is an R object which maps transcripts to the length (in bp) of their mature mRNA transcripts. Where available, it will also provide the mapping between a gene ID and its associated transcripts. The data is obtained from the UCSC table browser (http://genome.ucsc.edu/cgi-bin/hgTables) using the geneid table.
The data file was made by calling downloadLengthFromUCSC(bosTau3, geneid) on the date on which the package was last updated.
data(bosTau3.geneid.LENGTH) head(bosTau3.geneid.LENGTH)data(bosTau3.geneid.LENGTH) head(bosTau3.geneid.LENGTH)
bosTau3.geneSymbol.LENGTH is an R object which maps transcripts to the length (in bp) of their mature mRNA transcripts. Where available, it will also provide the mapping between a gene ID and its associated transcripts. The data is obtained from the UCSC table browser (http://genome.ucsc.edu/cgi-bin/hgTables) using the geneSymbol table.
The data file was made by calling downloadLengthFromUCSC(bosTau3, geneSymbol) on the date on which the package was last updated.
data(bosTau3.geneSymbol.LENGTH) head(bosTau3.geneSymbol.LENGTH)data(bosTau3.geneSymbol.LENGTH) head(bosTau3.geneSymbol.LENGTH)
bosTau3.genscan.LENGTH is an R object which maps transcripts to the length (in bp) of their mature mRNA transcripts. Where available, it will also provide the mapping between a gene ID and its associated transcripts. The data is obtained from the UCSC table browser (http://genome.ucsc.edu/cgi-bin/hgTables) using the genscan table.
The data file was made by calling downloadLengthFromUCSC(bosTau3, genscan) on the date on which the package was last updated.
data(bosTau3.genscan.LENGTH) head(bosTau3.genscan.LENGTH)data(bosTau3.genscan.LENGTH) head(bosTau3.genscan.LENGTH)
bosTau3.refGene.LENGTH is an R object which maps transcripts to the length (in bp) of their mature mRNA transcripts. Where available, it will also provide the mapping between a gene ID and its associated transcripts. The data is obtained from the UCSC table browser (http://genome.ucsc.edu/cgi-bin/hgTables) using the refGene table.
The data file was made by calling downloadLengthFromUCSC(bosTau3, refGene) on the date on which the package was last updated.
data(bosTau3.refGene.LENGTH) head(bosTau3.refGene.LENGTH)data(bosTau3.refGene.LENGTH) head(bosTau3.refGene.LENGTH)
bosTau3.sgpGene.LENGTH is an R object which maps transcripts to the length (in bp) of their mature mRNA transcripts. Where available, it will also provide the mapping between a gene ID and its associated transcripts. The data is obtained from the UCSC table browser (http://genome.ucsc.edu/cgi-bin/hgTables) using the sgpGene table.
The data file was made by calling downloadLengthFromUCSC(bosTau3, sgpGene) on the date on which the package was last updated.
data(bosTau3.sgpGene.LENGTH) head(bosTau3.sgpGene.LENGTH)data(bosTau3.sgpGene.LENGTH) head(bosTau3.sgpGene.LENGTH)
bosTau4.ensGene.LENGTH is an R object which maps transcripts to the length (in bp) of their mature mRNA transcripts. Where available, it will also provide the mapping between a gene ID and its associated transcripts. The data is obtained from the UCSC table browser (http://genome.ucsc.edu/cgi-bin/hgTables) using the ensGene table.
The data file was made by calling downloadLengthFromUCSC(bosTau4, ensGene) on the date on which the package was last updated.
data(bosTau4.ensGene.LENGTH) head(bosTau4.ensGene.LENGTH)data(bosTau4.ensGene.LENGTH) head(bosTau4.ensGene.LENGTH)
bosTau4.geneSymbol.LENGTH is an R object which maps transcripts to the length (in bp) of their mature mRNA transcripts. Where available, it will also provide the mapping between a gene ID and its associated transcripts. The data is obtained from the UCSC table browser (http://genome.ucsc.edu/cgi-bin/hgTables) using the geneSymbol table.
The data file was made by calling downloadLengthFromUCSC(bosTau4, geneSymbol) on the date on which the package was last updated.
data(bosTau4.geneSymbol.LENGTH) head(bosTau4.geneSymbol.LENGTH)data(bosTau4.geneSymbol.LENGTH) head(bosTau4.geneSymbol.LENGTH)
bosTau4.genscan.LENGTH is an R object which maps transcripts to the length (in bp) of their mature mRNA transcripts. Where available, it will also provide the mapping between a gene ID and its associated transcripts. The data is obtained from the UCSC table browser (http://genome.ucsc.edu/cgi-bin/hgTables) using the genscan table.
The data file was made by calling downloadLengthFromUCSC(bosTau4, genscan) on the date on which the package was last updated.
data(bosTau4.genscan.LENGTH) head(bosTau4.genscan.LENGTH)data(bosTau4.genscan.LENGTH) head(bosTau4.genscan.LENGTH)
bosTau4.nscanGene.LENGTH is an R object which maps transcripts to the length (in bp) of their mature mRNA transcripts. Where available, it will also provide the mapping between a gene ID and its associated transcripts. The data is obtained from the UCSC table browser (http://genome.ucsc.edu/cgi-bin/hgTables) using the nscanGene table.
The data file was made by calling downloadLengthFromUCSC(bosTau4, nscanGene) on the date on which the package was last updated.
data(bosTau4.nscanGene.LENGTH) head(bosTau4.nscanGene.LENGTH)data(bosTau4.nscanGene.LENGTH) head(bosTau4.nscanGene.LENGTH)
bosTau4.refGene.LENGTH is an R object which maps transcripts to the length (in bp) of their mature mRNA transcripts. Where available, it will also provide the mapping between a gene ID and its associated transcripts. The data is obtained from the UCSC table browser (http://genome.ucsc.edu/cgi-bin/hgTables) using the refGene table.
The data file was made by calling downloadLengthFromUCSC(bosTau4, refGene) on the date on which the package was last updated.
data(bosTau4.refGene.LENGTH) head(bosTau4.refGene.LENGTH)data(bosTau4.refGene.LENGTH) head(bosTau4.refGene.LENGTH)
braFlo1.xenoRefGene.LENGTH is an R object which maps transcripts to the length (in bp) of their mature mRNA transcripts. Where available, it will also provide the mapping between a gene ID and its associated transcripts. The data is obtained from the UCSC table browser (http://genome.ucsc.edu/cgi-bin/hgTables) using the xenoRefGene table.
The data file was made by calling downloadLengthFromUCSC(braFlo1, xenoRefGene) on the date on which the package was last updated.
data(braFlo1.xenoRefGene.LENGTH) head(braFlo1.xenoRefGene.LENGTH)data(braFlo1.xenoRefGene.LENGTH) head(braFlo1.xenoRefGene.LENGTH)
caeJap1.xenoRefGene.LENGTH is an R object which maps transcripts to the length (in bp) of their mature mRNA transcripts. Where available, it will also provide the mapping between a gene ID and its associated transcripts. The data is obtained from the UCSC table browser (http://genome.ucsc.edu/cgi-bin/hgTables) using the xenoRefGene table.
The data file was made by calling downloadLengthFromUCSC(caeJap1, xenoRefGene) on the date on which the package was last updated.
data(caeJap1.xenoRefGene.LENGTH) head(caeJap1.xenoRefGene.LENGTH)data(caeJap1.xenoRefGene.LENGTH) head(caeJap1.xenoRefGene.LENGTH)
caePb1.xenoRefGene.LENGTH is an R object which maps transcripts to the length (in bp) of their mature mRNA transcripts. Where available, it will also provide the mapping between a gene ID and its associated transcripts. The data is obtained from the UCSC table browser (http://genome.ucsc.edu/cgi-bin/hgTables) using the xenoRefGene table.
The data file was made by calling downloadLengthFromUCSC(caePb1, xenoRefGene) on the date on which the package was last updated.
data(caePb1.xenoRefGene.LENGTH) head(caePb1.xenoRefGene.LENGTH)data(caePb1.xenoRefGene.LENGTH) head(caePb1.xenoRefGene.LENGTH)
caePb2.xenoRefGene.LENGTH is an R object which maps transcripts to the length (in bp) of their mature mRNA transcripts. Where available, it will also provide the mapping between a gene ID and its associated transcripts. The data is obtained from the UCSC table browser (http://genome.ucsc.edu/cgi-bin/hgTables) using the xenoRefGene table.
The data file was made by calling downloadLengthFromUCSC(caePb2, xenoRefGene) on the date on which the package was last updated.
data(caePb2.xenoRefGene.LENGTH) head(caePb2.xenoRefGene.LENGTH)data(caePb2.xenoRefGene.LENGTH) head(caePb2.xenoRefGene.LENGTH)
caeRem2.xenoRefGene.LENGTH is an R object which maps transcripts to the length (in bp) of their mature mRNA transcripts. Where available, it will also provide the mapping between a gene ID and its associated transcripts. The data is obtained from the UCSC table browser (http://genome.ucsc.edu/cgi-bin/hgTables) using the xenoRefGene table.
The data file was made by calling downloadLengthFromUCSC(caeRem2, xenoRefGene) on the date on which the package was last updated.
data(caeRem2.xenoRefGene.LENGTH) head(caeRem2.xenoRefGene.LENGTH)data(caeRem2.xenoRefGene.LENGTH) head(caeRem2.xenoRefGene.LENGTH)
caeRem3.xenoRefGene.LENGTH is an R object which maps transcripts to the length (in bp) of their mature mRNA transcripts. Where available, it will also provide the mapping between a gene ID and its associated transcripts. The data is obtained from the UCSC table browser (http://genome.ucsc.edu/cgi-bin/hgTables) using the xenoRefGene table.
The data file was made by calling downloadLengthFromUCSC(caeRem3, xenoRefGene) on the date on which the package was last updated.
data(caeRem3.xenoRefGene.LENGTH) head(caeRem3.xenoRefGene.LENGTH)data(caeRem3.xenoRefGene.LENGTH) head(caeRem3.xenoRefGene.LENGTH)
calJac1.genscan.LENGTH is an R object which maps transcripts to the length (in bp) of their mature mRNA transcripts. Where available, it will also provide the mapping between a gene ID and its associated transcripts. The data is obtained from the UCSC table browser (http://genome.ucsc.edu/cgi-bin/hgTables) using the genscan table.
The data file was made by calling downloadLengthFromUCSC(calJac1, genscan) on the date on which the package was last updated.
data(calJac1.genscan.LENGTH) head(calJac1.genscan.LENGTH)data(calJac1.genscan.LENGTH) head(calJac1.genscan.LENGTH)
calJac1.nscanGene.LENGTH is an R object which maps transcripts to the length (in bp) of their mature mRNA transcripts. Where available, it will also provide the mapping between a gene ID and its associated transcripts. The data is obtained from the UCSC table browser (http://genome.ucsc.edu/cgi-bin/hgTables) using the nscanGene table.
The data file was made by calling downloadLengthFromUCSC(calJac1, nscanGene) on the date on which the package was last updated.
data(calJac1.nscanGene.LENGTH) head(calJac1.nscanGene.LENGTH)data(calJac1.nscanGene.LENGTH) head(calJac1.nscanGene.LENGTH)
calJac1.xenoRefGene.LENGTH is an R object which maps transcripts to the length (in bp) of their mature mRNA transcripts. Where available, it will also provide the mapping between a gene ID and its associated transcripts. The data is obtained from the UCSC table browser (http://genome.ucsc.edu/cgi-bin/hgTables) using the xenoRefGene table.
The data file was made by calling downloadLengthFromUCSC(calJac1, xenoRefGene) on the date on which the package was last updated.
data(calJac1.xenoRefGene.LENGTH) head(calJac1.xenoRefGene.LENGTH)data(calJac1.xenoRefGene.LENGTH) head(calJac1.xenoRefGene.LENGTH)
canFam1.ensGene.LENGTH is an R object which maps transcripts to the length (in bp) of their mature mRNA transcripts. Where available, it will also provide the mapping between a gene ID and its associated transcripts. The data is obtained from the UCSC table browser (http://genome.ucsc.edu/cgi-bin/hgTables) using the ensGene table.
The data file was made by calling downloadLengthFromUCSC(canFam1, ensGene) on the date on which the package was last updated.
data(canFam1.ensGene.LENGTH) head(canFam1.ensGene.LENGTH)data(canFam1.ensGene.LENGTH) head(canFam1.ensGene.LENGTH)
canFam1.geneSymbol.LENGTH is an R object which maps transcripts to the length (in bp) of their mature mRNA transcripts. Where available, it will also provide the mapping between a gene ID and its associated transcripts. The data is obtained from the UCSC table browser (http://genome.ucsc.edu/cgi-bin/hgTables) using the geneSymbol table.
The data file was made by calling downloadLengthFromUCSC(canFam1, geneSymbol) on the date on which the package was last updated.
data(canFam1.geneSymbol.LENGTH) head(canFam1.geneSymbol.LENGTH)data(canFam1.geneSymbol.LENGTH) head(canFam1.geneSymbol.LENGTH)
canFam1.genscan.LENGTH is an R object which maps transcripts to the length (in bp) of their mature mRNA transcripts. Where available, it will also provide the mapping between a gene ID and its associated transcripts. The data is obtained from the UCSC table browser (http://genome.ucsc.edu/cgi-bin/hgTables) using the genscan table.
The data file was made by calling downloadLengthFromUCSC(canFam1, genscan) on the date on which the package was last updated.
data(canFam1.genscan.LENGTH) head(canFam1.genscan.LENGTH)data(canFam1.genscan.LENGTH) head(canFam1.genscan.LENGTH)
canFam1.nscanGene.LENGTH is an R object which maps transcripts to the length (in bp) of their mature mRNA transcripts. Where available, it will also provide the mapping between a gene ID and its associated transcripts. The data is obtained from the UCSC table browser (http://genome.ucsc.edu/cgi-bin/hgTables) using the nscanGene table.
The data file was made by calling downloadLengthFromUCSC(canFam1, nscanGene) on the date on which the package was last updated.
data(canFam1.nscanGene.LENGTH) head(canFam1.nscanGene.LENGTH)data(canFam1.nscanGene.LENGTH) head(canFam1.nscanGene.LENGTH)
canFam1.refGene.LENGTH is an R object which maps transcripts to the length (in bp) of their mature mRNA transcripts. Where available, it will also provide the mapping between a gene ID and its associated transcripts. The data is obtained from the UCSC table browser (http://genome.ucsc.edu/cgi-bin/hgTables) using the refGene table.
The data file was made by calling downloadLengthFromUCSC(canFam1, refGene) on the date on which the package was last updated.
data(canFam1.refGene.LENGTH) head(canFam1.refGene.LENGTH)data(canFam1.refGene.LENGTH) head(canFam1.refGene.LENGTH)
canFam1.xenoRefGene.LENGTH is an R object which maps transcripts to the length (in bp) of their mature mRNA transcripts. Where available, it will also provide the mapping between a gene ID and its associated transcripts. The data is obtained from the UCSC table browser (http://genome.ucsc.edu/cgi-bin/hgTables) using the xenoRefGene table.
The data file was made by calling downloadLengthFromUCSC(canFam1, xenoRefGene) on the date on which the package was last updated.
data(canFam1.xenoRefGene.LENGTH) head(canFam1.xenoRefGene.LENGTH)data(canFam1.xenoRefGene.LENGTH) head(canFam1.xenoRefGene.LENGTH)
canFam2.ensGene.LENGTH is an R object which maps transcripts to the length (in bp) of their mature mRNA transcripts. Where available, it will also provide the mapping between a gene ID and its associated transcripts. The data is obtained from the UCSC table browser (http://genome.ucsc.edu/cgi-bin/hgTables) using the ensGene table.
The data file was made by calling downloadLengthFromUCSC(canFam2, ensGene) on the date on which the package was last updated.
data(canFam2.ensGene.LENGTH) head(canFam2.ensGene.LENGTH)data(canFam2.ensGene.LENGTH) head(canFam2.ensGene.LENGTH)
canFam2.geneSymbol.LENGTH is an R object which maps transcripts to the length (in bp) of their mature mRNA transcripts. Where available, it will also provide the mapping between a gene ID and its associated transcripts. The data is obtained from the UCSC table browser (http://genome.ucsc.edu/cgi-bin/hgTables) using the geneSymbol table.
The data file was made by calling downloadLengthFromUCSC(canFam2, geneSymbol) on the date on which the package was last updated.
data(canFam2.geneSymbol.LENGTH) head(canFam2.geneSymbol.LENGTH)data(canFam2.geneSymbol.LENGTH) head(canFam2.geneSymbol.LENGTH)
canFam2.genscan.LENGTH is an R object which maps transcripts to the length (in bp) of their mature mRNA transcripts. Where available, it will also provide the mapping between a gene ID and its associated transcripts. The data is obtained from the UCSC table browser (http://genome.ucsc.edu/cgi-bin/hgTables) using the genscan table.
The data file was made by calling downloadLengthFromUCSC(canFam2, genscan) on the date on which the package was last updated.
data(canFam2.genscan.LENGTH) head(canFam2.genscan.LENGTH)data(canFam2.genscan.LENGTH) head(canFam2.genscan.LENGTH)
canFam2.nscanGene.LENGTH is an R object which maps transcripts to the length (in bp) of their mature mRNA transcripts. Where available, it will also provide the mapping between a gene ID and its associated transcripts. The data is obtained from the UCSC table browser (http://genome.ucsc.edu/cgi-bin/hgTables) using the nscanGene table.
The data file was made by calling downloadLengthFromUCSC(canFam2, nscanGene) on the date on which the package was last updated.
data(canFam2.nscanGene.LENGTH) head(canFam2.nscanGene.LENGTH)data(canFam2.nscanGene.LENGTH) head(canFam2.nscanGene.LENGTH)
canFam2.refGene.LENGTH is an R object which maps transcripts to the length (in bp) of their mature mRNA transcripts. Where available, it will also provide the mapping between a gene ID and its associated transcripts. The data is obtained from the UCSC table browser (http://genome.ucsc.edu/cgi-bin/hgTables) using the refGene table.
The data file was made by calling downloadLengthFromUCSC(canFam2, refGene) on the date on which the package was last updated.
data(canFam2.refGene.LENGTH) head(canFam2.refGene.LENGTH)data(canFam2.refGene.LENGTH) head(canFam2.refGene.LENGTH)
canFam2.xenoRefGene.LENGTH is an R object which maps transcripts to the length (in bp) of their mature mRNA transcripts. Where available, it will also provide the mapping between a gene ID and its associated transcripts. The data is obtained from the UCSC table browser (http://genome.ucsc.edu/cgi-bin/hgTables) using the xenoRefGene table.
The data file was made by calling downloadLengthFromUCSC(canFam2, xenoRefGene) on the date on which the package was last updated.
data(canFam2.xenoRefGene.LENGTH) head(canFam2.xenoRefGene.LENGTH)data(canFam2.xenoRefGene.LENGTH) head(canFam2.xenoRefGene.LENGTH)
cavPor3.ensGene.LENGTH is an R object which maps transcripts to the length (in bp) of their mature mRNA transcripts. Where available, it will also provide the mapping between a gene ID and its associated transcripts. The data is obtained from the UCSC table browser (http://genome.ucsc.edu/cgi-bin/hgTables) using the ensGene table.
The data file was made by calling downloadLengthFromUCSC(cavPor3, ensGene) on the date on which the package was last updated.
data(cavPor3.ensGene.LENGTH) head(cavPor3.ensGene.LENGTH)data(cavPor3.ensGene.LENGTH) head(cavPor3.ensGene.LENGTH)
cavPor3.genscan.LENGTH is an R object which maps transcripts to the length (in bp) of their mature mRNA transcripts. Where available, it will also provide the mapping between a gene ID and its associated transcripts. The data is obtained from the UCSC table browser (http://genome.ucsc.edu/cgi-bin/hgTables) using the genscan table.
The data file was made by calling downloadLengthFromUCSC(cavPor3, genscan) on the date on which the package was last updated.
data(cavPor3.genscan.LENGTH) head(cavPor3.genscan.LENGTH)data(cavPor3.genscan.LENGTH) head(cavPor3.genscan.LENGTH)
cavPor3.nscanGene.LENGTH is an R object which maps transcripts to the length (in bp) of their mature mRNA transcripts. Where available, it will also provide the mapping between a gene ID and its associated transcripts. The data is obtained from the UCSC table browser (http://genome.ucsc.edu/cgi-bin/hgTables) using the nscanGene table.
The data file was made by calling downloadLengthFromUCSC(cavPor3, nscanGene) on the date on which the package was last updated.
data(cavPor3.nscanGene.LENGTH) head(cavPor3.nscanGene.LENGTH)data(cavPor3.nscanGene.LENGTH) head(cavPor3.nscanGene.LENGTH)
cavPor3.xenoRefGene.LENGTH is an R object which maps transcripts to the length (in bp) of their mature mRNA transcripts. Where available, it will also provide the mapping between a gene ID and its associated transcripts. The data is obtained from the UCSC table browser (http://genome.ucsc.edu/cgi-bin/hgTables) using the xenoRefGene table.
The data file was made by calling downloadLengthFromUCSC(cavPor3, xenoRefGene) on the date on which the package was last updated.
data(cavPor3.xenoRefGene.LENGTH) head(cavPor3.xenoRefGene.LENGTH)data(cavPor3.xenoRefGene.LENGTH) head(cavPor3.xenoRefGene.LENGTH)
cb1.xenoRefGene.LENGTH is an R object which maps transcripts to the length (in bp) of their mature mRNA transcripts. Where available, it will also provide the mapping between a gene ID and its associated transcripts. The data is obtained from the UCSC table browser (http://genome.ucsc.edu/cgi-bin/hgTables) using the xenoRefGene table.
The data file was made by calling downloadLengthFromUCSC(cb1, xenoRefGene) on the date on which the package was last updated.
data(cb1.xenoRefGene.LENGTH) head(cb1.xenoRefGene.LENGTH)data(cb1.xenoRefGene.LENGTH) head(cb1.xenoRefGene.LENGTH)
cb3.xenoRefGene.LENGTH is an R object which maps transcripts to the length (in bp) of their mature mRNA transcripts. Where available, it will also provide the mapping between a gene ID and its associated transcripts. The data is obtained from the UCSC table browser (http://genome.ucsc.edu/cgi-bin/hgTables) using the xenoRefGene table.
The data file was made by calling downloadLengthFromUCSC(cb3, xenoRefGene) on the date on which the package was last updated.
data(cb3.xenoRefGene.LENGTH) head(cb3.xenoRefGene.LENGTH)data(cb3.xenoRefGene.LENGTH) head(cb3.xenoRefGene.LENGTH)
ce2.geneid.LENGTH is an R object which maps transcripts to the length (in bp) of their mature mRNA transcripts. Where available, it will also provide the mapping between a gene ID and its associated transcripts. The data is obtained from the UCSC table browser (http://genome.ucsc.edu/cgi-bin/hgTables) using the geneid table.
The data file was made by calling downloadLengthFromUCSC(ce2, geneid) on the date on which the package was last updated.
data(ce2.geneid.LENGTH) head(ce2.geneid.LENGTH)data(ce2.geneid.LENGTH) head(ce2.geneid.LENGTH)
ce2.geneSymbol.LENGTH is an R object which maps transcripts to the length (in bp) of their mature mRNA transcripts. Where available, it will also provide the mapping between a gene ID and its associated transcripts. The data is obtained from the UCSC table browser (http://genome.ucsc.edu/cgi-bin/hgTables) using the geneSymbol table.
The data file was made by calling downloadLengthFromUCSC(ce2, geneSymbol) on the date on which the package was last updated.
data(ce2.geneSymbol.LENGTH) head(ce2.geneSymbol.LENGTH)data(ce2.geneSymbol.LENGTH) head(ce2.geneSymbol.LENGTH)
ce2.refGene.LENGTH is an R object which maps transcripts to the length (in bp) of their mature mRNA transcripts. Where available, it will also provide the mapping between a gene ID and its associated transcripts. The data is obtained from the UCSC table browser (http://genome.ucsc.edu/cgi-bin/hgTables) using the refGene table.
The data file was made by calling downloadLengthFromUCSC(ce2, refGene) on the date on which the package was last updated.
data(ce2.refGene.LENGTH) head(ce2.refGene.LENGTH)data(ce2.refGene.LENGTH) head(ce2.refGene.LENGTH)
ce4.geneSymbol.LENGTH is an R object which maps transcripts to the length (in bp) of their mature mRNA transcripts. Where available, it will also provide the mapping between a gene ID and its associated transcripts. The data is obtained from the UCSC table browser (http://genome.ucsc.edu/cgi-bin/hgTables) using the geneSymbol table.
The data file was made by calling downloadLengthFromUCSC(ce4, geneSymbol) on the date on which the package was last updated.
data(ce4.geneSymbol.LENGTH) head(ce4.geneSymbol.LENGTH)data(ce4.geneSymbol.LENGTH) head(ce4.geneSymbol.LENGTH)
ce4.refGene.LENGTH is an R object which maps transcripts to the length (in bp) of their mature mRNA transcripts. Where available, it will also provide the mapping between a gene ID and its associated transcripts. The data is obtained from the UCSC table browser (http://genome.ucsc.edu/cgi-bin/hgTables) using the refGene table.
The data file was made by calling downloadLengthFromUCSC(ce4, refGene) on the date on which the package was last updated.
data(ce4.refGene.LENGTH) head(ce4.refGene.LENGTH)data(ce4.refGene.LENGTH) head(ce4.refGene.LENGTH)
ce4.xenoRefGene.LENGTH is an R object which maps transcripts to the length (in bp) of their mature mRNA transcripts. Where available, it will also provide the mapping between a gene ID and its associated transcripts. The data is obtained from the UCSC table browser (http://genome.ucsc.edu/cgi-bin/hgTables) using the xenoRefGene table.
The data file was made by calling downloadLengthFromUCSC(ce4, xenoRefGene) on the date on which the package was last updated.
data(ce4.xenoRefGene.LENGTH) head(ce4.xenoRefGene.LENGTH)data(ce4.xenoRefGene.LENGTH) head(ce4.xenoRefGene.LENGTH)
ce6.ensGene.LENGTH is an R object which maps transcripts to the length (in bp) of their mature mRNA transcripts. Where available, it will also provide the mapping between a gene ID and its associated transcripts. The data is obtained from the UCSC table browser (http://genome.ucsc.edu/cgi-bin/hgTables) using the ensGene table.
The data file was made by calling downloadLengthFromUCSC(ce6, ensGene) on the date on which the package was last updated.
data(ce6.ensGene.LENGTH) head(ce6.ensGene.LENGTH)data(ce6.ensGene.LENGTH) head(ce6.ensGene.LENGTH)
ce6.geneSymbol.LENGTH is an R object which maps transcripts to the length (in bp) of their mature mRNA transcripts. Where available, it will also provide the mapping between a gene ID and its associated transcripts. The data is obtained from the UCSC table browser (http://genome.ucsc.edu/cgi-bin/hgTables) using the geneSymbol table.
The data file was made by calling downloadLengthFromUCSC(ce6, geneSymbol) on the date on which the package was last updated.
data(ce6.geneSymbol.LENGTH) head(ce6.geneSymbol.LENGTH)data(ce6.geneSymbol.LENGTH) head(ce6.geneSymbol.LENGTH)
ce6.refGene.LENGTH is an R object which maps transcripts to the length (in bp) of their mature mRNA transcripts. Where available, it will also provide the mapping between a gene ID and its associated transcripts. The data is obtained from the UCSC table browser (http://genome.ucsc.edu/cgi-bin/hgTables) using the refGene table.
The data file was made by calling downloadLengthFromUCSC(ce6, refGene) on the date on which the package was last updated.
data(ce6.refGene.LENGTH) head(ce6.refGene.LENGTH)data(ce6.refGene.LENGTH) head(ce6.refGene.LENGTH)
ce6.xenoRefGene.LENGTH is an R object which maps transcripts to the length (in bp) of their mature mRNA transcripts. Where available, it will also provide the mapping between a gene ID and its associated transcripts. The data is obtained from the UCSC table browser (http://genome.ucsc.edu/cgi-bin/hgTables) using the xenoRefGene table.
The data file was made by calling downloadLengthFromUCSC(ce6, xenoRefGene) on the date on which the package was last updated.
data(ce6.xenoRefGene.LENGTH) head(ce6.xenoRefGene.LENGTH)data(ce6.xenoRefGene.LENGTH) head(ce6.xenoRefGene.LENGTH)
ci1.geneSymbol.LENGTH is an R object which maps transcripts to the length (in bp) of their mature mRNA transcripts. Where available, it will also provide the mapping between a gene ID and its associated transcripts. The data is obtained from the UCSC table browser (http://genome.ucsc.edu/cgi-bin/hgTables) using the geneSymbol table.
The data file was made by calling downloadLengthFromUCSC(ci1, geneSymbol) on the date on which the package was last updated.
data(ci1.geneSymbol.LENGTH) head(ci1.geneSymbol.LENGTH)data(ci1.geneSymbol.LENGTH) head(ci1.geneSymbol.LENGTH)
ci1.refGene.LENGTH is an R object which maps transcripts to the length (in bp) of their mature mRNA transcripts. Where available, it will also provide the mapping between a gene ID and its associated transcripts. The data is obtained from the UCSC table browser (http://genome.ucsc.edu/cgi-bin/hgTables) using the refGene table.
The data file was made by calling downloadLengthFromUCSC(ci1, refGene) on the date on which the package was last updated.
data(ci1.refGene.LENGTH) head(ci1.refGene.LENGTH)data(ci1.refGene.LENGTH) head(ci1.refGene.LENGTH)
ci1.xenoRefGene.LENGTH is an R object which maps transcripts to the length (in bp) of their mature mRNA transcripts. Where available, it will also provide the mapping between a gene ID and its associated transcripts. The data is obtained from the UCSC table browser (http://genome.ucsc.edu/cgi-bin/hgTables) using the xenoRefGene table.
The data file was made by calling downloadLengthFromUCSC(ci1, xenoRefGene) on the date on which the package was last updated.
data(ci1.xenoRefGene.LENGTH) head(ci1.xenoRefGene.LENGTH)data(ci1.xenoRefGene.LENGTH) head(ci1.xenoRefGene.LENGTH)
ci2.ensGene.LENGTH is an R object which maps transcripts to the length (in bp) of their mature mRNA transcripts. Where available, it will also provide the mapping between a gene ID and its associated transcripts. The data is obtained from the UCSC table browser (http://genome.ucsc.edu/cgi-bin/hgTables) using the ensGene table.
The data file was made by calling downloadLengthFromUCSC(ci2, ensGene) on the date on which the package was last updated.
data(ci2.ensGene.LENGTH) head(ci2.ensGene.LENGTH)data(ci2.ensGene.LENGTH) head(ci2.ensGene.LENGTH)
ci2.geneSymbol.LENGTH is an R object which maps transcripts to the length (in bp) of their mature mRNA transcripts. Where available, it will also provide the mapping between a gene ID and its associated transcripts. The data is obtained from the UCSC table browser (http://genome.ucsc.edu/cgi-bin/hgTables) using the geneSymbol table.
The data file was made by calling downloadLengthFromUCSC(ci2, geneSymbol) on the date on which the package was last updated.
data(ci2.geneSymbol.LENGTH) head(ci2.geneSymbol.LENGTH)data(ci2.geneSymbol.LENGTH) head(ci2.geneSymbol.LENGTH)
ci2.refGene.LENGTH is an R object which maps transcripts to the length (in bp) of their mature mRNA transcripts. Where available, it will also provide the mapping between a gene ID and its associated transcripts. The data is obtained from the UCSC table browser (http://genome.ucsc.edu/cgi-bin/hgTables) using the refGene table.
The data file was made by calling downloadLengthFromUCSC(ci2, refGene) on the date on which the package was last updated.
data(ci2.refGene.LENGTH) head(ci2.refGene.LENGTH)data(ci2.refGene.LENGTH) head(ci2.refGene.LENGTH)
ci2.xenoRefGene.LENGTH is an R object which maps transcripts to the length (in bp) of their mature mRNA transcripts. Where available, it will also provide the mapping between a gene ID and its associated transcripts. The data is obtained from the UCSC table browser (http://genome.ucsc.edu/cgi-bin/hgTables) using the xenoRefGene table.
The data file was made by calling downloadLengthFromUCSC(ci2, xenoRefGene) on the date on which the package was last updated.
data(ci2.xenoRefGene.LENGTH) head(ci2.xenoRefGene.LENGTH)data(ci2.xenoRefGene.LENGTH) head(ci2.xenoRefGene.LENGTH)
danRer3.ensGene.LENGTH is an R object which maps transcripts to the length (in bp) of their mature mRNA transcripts. Where available, it will also provide the mapping between a gene ID and its associated transcripts. The data is obtained from the UCSC table browser (http://genome.ucsc.edu/cgi-bin/hgTables) using the ensGene table.
The data file was made by calling downloadLengthFromUCSC(danRer3, ensGene) on the date on which the package was last updated.
data(danRer3.ensGene.LENGTH) head(danRer3.ensGene.LENGTH)data(danRer3.ensGene.LENGTH) head(danRer3.ensGene.LENGTH)
danRer3.geneSymbol.LENGTH is an R object which maps transcripts to the length (in bp) of their mature mRNA transcripts. Where available, it will also provide the mapping between a gene ID and its associated transcripts. The data is obtained from the UCSC table browser (http://genome.ucsc.edu/cgi-bin/hgTables) using the geneSymbol table.
The data file was made by calling downloadLengthFromUCSC(danRer3, geneSymbol) on the date on which the package was last updated.
data(danRer3.geneSymbol.LENGTH) head(danRer3.geneSymbol.LENGTH)data(danRer3.geneSymbol.LENGTH) head(danRer3.geneSymbol.LENGTH)
danRer3.refGene.LENGTH is an R object which maps transcripts to the length (in bp) of their mature mRNA transcripts. Where available, it will also provide the mapping between a gene ID and its associated transcripts. The data is obtained from the UCSC table browser (http://genome.ucsc.edu/cgi-bin/hgTables) using the refGene table.
The data file was made by calling downloadLengthFromUCSC(danRer3, refGene) on the date on which the package was last updated.
data(danRer3.refGene.LENGTH) head(danRer3.refGene.LENGTH)data(danRer3.refGene.LENGTH) head(danRer3.refGene.LENGTH)
danRer4.ensGene.LENGTH is an R object which maps transcripts to the length (in bp) of their mature mRNA transcripts. Where available, it will also provide the mapping between a gene ID and its associated transcripts. The data is obtained from the UCSC table browser (http://genome.ucsc.edu/cgi-bin/hgTables) using the ensGene table.
The data file was made by calling downloadLengthFromUCSC(danRer4, ensGene) on the date on which the package was last updated.
data(danRer4.ensGene.LENGTH) head(danRer4.ensGene.LENGTH)data(danRer4.ensGene.LENGTH) head(danRer4.ensGene.LENGTH)
danRer4.geneSymbol.LENGTH is an R object which maps transcripts to the length (in bp) of their mature mRNA transcripts. Where available, it will also provide the mapping between a gene ID and its associated transcripts. The data is obtained from the UCSC table browser (http://genome.ucsc.edu/cgi-bin/hgTables) using the geneSymbol table.
The data file was made by calling downloadLengthFromUCSC(danRer4, geneSymbol) on the date on which the package was last updated.
data(danRer4.geneSymbol.LENGTH) head(danRer4.geneSymbol.LENGTH)data(danRer4.geneSymbol.LENGTH) head(danRer4.geneSymbol.LENGTH)
danRer4.genscan.LENGTH is an R object which maps transcripts to the length (in bp) of their mature mRNA transcripts. Where available, it will also provide the mapping between a gene ID and its associated transcripts. The data is obtained from the UCSC table browser (http://genome.ucsc.edu/cgi-bin/hgTables) using the genscan table.
The data file was made by calling downloadLengthFromUCSC(danRer4, genscan) on the date on which the package was last updated.
data(danRer4.genscan.LENGTH) head(danRer4.genscan.LENGTH)data(danRer4.genscan.LENGTH) head(danRer4.genscan.LENGTH)
danRer4.nscanGene.LENGTH is an R object which maps transcripts to the length (in bp) of their mature mRNA transcripts. Where available, it will also provide the mapping between a gene ID and its associated transcripts. The data is obtained from the UCSC table browser (http://genome.ucsc.edu/cgi-bin/hgTables) using the nscanGene table.
The data file was made by calling downloadLengthFromUCSC(danRer4, nscanGene) on the date on which the package was last updated.
data(danRer4.nscanGene.LENGTH) head(danRer4.nscanGene.LENGTH)data(danRer4.nscanGene.LENGTH) head(danRer4.nscanGene.LENGTH)
danRer4.refGene.LENGTH is an R object which maps transcripts to the length (in bp) of their mature mRNA transcripts. Where available, it will also provide the mapping between a gene ID and its associated transcripts. The data is obtained from the UCSC table browser (http://genome.ucsc.edu/cgi-bin/hgTables) using the refGene table.
The data file was made by calling downloadLengthFromUCSC(danRer4, refGene) on the date on which the package was last updated.
data(danRer4.refGene.LENGTH) head(danRer4.refGene.LENGTH)data(danRer4.refGene.LENGTH) head(danRer4.refGene.LENGTH)
danRer5.ensGene.LENGTH is an R object which maps transcripts to the length (in bp) of their mature mRNA transcripts. Where available, it will also provide the mapping between a gene ID and its associated transcripts. The data is obtained from the UCSC table browser (http://genome.ucsc.edu/cgi-bin/hgTables) using the ensGene table.
The data file was made by calling downloadLengthFromUCSC(danRer5, ensGene) on the date on which the package was last updated.
data(danRer5.ensGene.LENGTH) head(danRer5.ensGene.LENGTH)data(danRer5.ensGene.LENGTH) head(danRer5.ensGene.LENGTH)
danRer5.geneSymbol.LENGTH is an R object which maps transcripts to the length (in bp) of their mature mRNA transcripts. Where available, it will also provide the mapping between a gene ID and its associated transcripts. The data is obtained from the UCSC table browser (http://genome.ucsc.edu/cgi-bin/hgTables) using the geneSymbol table.
The data file was made by calling downloadLengthFromUCSC(danRer5, geneSymbol) on the date on which the package was last updated.
data(danRer5.geneSymbol.LENGTH) head(danRer5.geneSymbol.LENGTH)data(danRer5.geneSymbol.LENGTH) head(danRer5.geneSymbol.LENGTH)
danRer5.refGene.LENGTH is an R object which maps transcripts to the length (in bp) of their mature mRNA transcripts. Where available, it will also provide the mapping between a gene ID and its associated transcripts. The data is obtained from the UCSC table browser (http://genome.ucsc.edu/cgi-bin/hgTables) using the refGene table.
The data file was made by calling downloadLengthFromUCSC(danRer5, refGene) on the date on which the package was last updated.
data(danRer5.refGene.LENGTH) head(danRer5.refGene.LENGTH)data(danRer5.refGene.LENGTH) head(danRer5.refGene.LENGTH)
danRer5.vegaGene.LENGTH is an R object which maps transcripts to the length (in bp) of their mature mRNA transcripts. Where available, it will also provide the mapping between a gene ID and its associated transcripts. The data is obtained from the UCSC table browser (http://genome.ucsc.edu/cgi-bin/hgTables) using the vegaGene table.
The data file was made by calling downloadLengthFromUCSC(danRer5, vegaGene) on the date on which the package was last updated.
data(danRer5.vegaGene.LENGTH) head(danRer5.vegaGene.LENGTH)data(danRer5.vegaGene.LENGTH) head(danRer5.vegaGene.LENGTH)
danRer5.vegaPseudoGene.LENGTH is an R object which maps transcripts to the length (in bp) of their mature mRNA transcripts. Where available, it will also provide the mapping between a gene ID and its associated transcripts. The data is obtained from the UCSC table browser (http://genome.ucsc.edu/cgi-bin/hgTables) using the vegaPseudoGene table.
The data file was made by calling downloadLengthFromUCSC(danRer5, vegaPseudoGene) on the date on which the package was last updated.
data(danRer5.vegaPseudoGene.LENGTH) head(danRer5.vegaPseudoGene.LENGTH)data(danRer5.vegaPseudoGene.LENGTH) head(danRer5.vegaPseudoGene.LENGTH)
danRer6.ensGene.LENGTH is an R object which maps transcripts to the length (in bp) of their mature mRNA transcripts. Where available, it will also provide the mapping between a gene ID and its associated transcripts. The data is obtained from the UCSC table browser (http://genome.ucsc.edu/cgi-bin/hgTables) using the ensGene table.
The data file was made by calling downloadLengthFromUCSC(danRer6, ensGene) on the date on which the package was last updated.
data(danRer6.ensGene.LENGTH) head(danRer6.ensGene.LENGTH)data(danRer6.ensGene.LENGTH) head(danRer6.ensGene.LENGTH)
danRer6.geneSymbol.LENGTH is an R object which maps transcripts to the length (in bp) of their mature mRNA transcripts. Where available, it will also provide the mapping between a gene ID and its associated transcripts. The data is obtained from the UCSC table browser (http://genome.ucsc.edu/cgi-bin/hgTables) using the geneSymbol table.
The data file was made by calling downloadLengthFromUCSC(danRer6, geneSymbol) on the date on which the package was last updated.
data(danRer6.geneSymbol.LENGTH) head(danRer6.geneSymbol.LENGTH)data(danRer6.geneSymbol.LENGTH) head(danRer6.geneSymbol.LENGTH)
danRer6.refGene.LENGTH is an R object which maps transcripts to the length (in bp) of their mature mRNA transcripts. Where available, it will also provide the mapping between a gene ID and its associated transcripts. The data is obtained from the UCSC table browser (http://genome.ucsc.edu/cgi-bin/hgTables) using the refGene table.
The data file was made by calling downloadLengthFromUCSC(danRer6, refGene) on the date on which the package was last updated.
data(danRer6.refGene.LENGTH) head(danRer6.refGene.LENGTH)data(danRer6.refGene.LENGTH) head(danRer6.refGene.LENGTH)
danRer6.xenoRefGene.LENGTH is an R object which maps transcripts to the length (in bp) of their mature mRNA transcripts. Where available, it will also provide the mapping between a gene ID and its associated transcripts. The data is obtained from the UCSC table browser (http://genome.ucsc.edu/cgi-bin/hgTables) using the xenoRefGene table.
The data file was made by calling downloadLengthFromUCSC(danRer6, xenoRefGene) on the date on which the package was last updated.
data(danRer6.xenoRefGene.LENGTH) head(danRer6.xenoRefGene.LENGTH)data(danRer6.xenoRefGene.LENGTH) head(danRer6.xenoRefGene.LENGTH)
dm1.geneSymbol.LENGTH is an R object which maps transcripts to the length (in bp) of their mature mRNA transcripts. Where available, it will also provide the mapping between a gene ID and its associated transcripts. The data is obtained from the UCSC table browser (http://genome.ucsc.edu/cgi-bin/hgTables) using the geneSymbol table.
The data file was made by calling downloadLengthFromUCSC(dm1, geneSymbol) on the date on which the package was last updated.
data(dm1.geneSymbol.LENGTH) head(dm1.geneSymbol.LENGTH)data(dm1.geneSymbol.LENGTH) head(dm1.geneSymbol.LENGTH)
dm1.genscan.LENGTH is an R object which maps transcripts to the length (in bp) of their mature mRNA transcripts. Where available, it will also provide the mapping between a gene ID and its associated transcripts. The data is obtained from the UCSC table browser (http://genome.ucsc.edu/cgi-bin/hgTables) using the genscan table.
The data file was made by calling downloadLengthFromUCSC(dm1, genscan) on the date on which the package was last updated.
data(dm1.genscan.LENGTH) head(dm1.genscan.LENGTH)data(dm1.genscan.LENGTH) head(dm1.genscan.LENGTH)
dm1.refGene.LENGTH is an R object which maps transcripts to the length (in bp) of their mature mRNA transcripts. Where available, it will also provide the mapping between a gene ID and its associated transcripts. The data is obtained from the UCSC table browser (http://genome.ucsc.edu/cgi-bin/hgTables) using the refGene table.
The data file was made by calling downloadLengthFromUCSC(dm1, refGene) on the date on which the package was last updated.
data(dm1.refGene.LENGTH) head(dm1.refGene.LENGTH)data(dm1.refGene.LENGTH) head(dm1.refGene.LENGTH)
dm2.geneid.LENGTH is an R object which maps transcripts to the length (in bp) of their mature mRNA transcripts. Where available, it will also provide the mapping between a gene ID and its associated transcripts. The data is obtained from the UCSC table browser (http://genome.ucsc.edu/cgi-bin/hgTables) using the geneid table.
The data file was made by calling downloadLengthFromUCSC(dm2, geneid) on the date on which the package was last updated.
data(dm2.geneid.LENGTH) head(dm2.geneid.LENGTH)data(dm2.geneid.LENGTH) head(dm2.geneid.LENGTH)
dm2.geneSymbol.LENGTH is an R object which maps transcripts to the length (in bp) of their mature mRNA transcripts. Where available, it will also provide the mapping between a gene ID and its associated transcripts. The data is obtained from the UCSC table browser (http://genome.ucsc.edu/cgi-bin/hgTables) using the geneSymbol table.
The data file was made by calling downloadLengthFromUCSC(dm2, geneSymbol) on the date on which the package was last updated.
data(dm2.geneSymbol.LENGTH) head(dm2.geneSymbol.LENGTH)data(dm2.geneSymbol.LENGTH) head(dm2.geneSymbol.LENGTH)
dm2.genscan.LENGTH is an R object which maps transcripts to the length (in bp) of their mature mRNA transcripts. Where available, it will also provide the mapping between a gene ID and its associated transcripts. The data is obtained from the UCSC table browser (http://genome.ucsc.edu/cgi-bin/hgTables) using the genscan table.
The data file was made by calling downloadLengthFromUCSC(dm2, genscan) on the date on which the package was last updated.
data(dm2.genscan.LENGTH) head(dm2.genscan.LENGTH)data(dm2.genscan.LENGTH) head(dm2.genscan.LENGTH)
dm2.nscanGene.LENGTH is an R object which maps transcripts to the length (in bp) of their mature mRNA transcripts. Where available, it will also provide the mapping between a gene ID and its associated transcripts. The data is obtained from the UCSC table browser (http://genome.ucsc.edu/cgi-bin/hgTables) using the nscanGene table.
The data file was made by calling downloadLengthFromUCSC(dm2, nscanGene) on the date on which the package was last updated.
data(dm2.nscanGene.LENGTH) head(dm2.nscanGene.LENGTH)data(dm2.nscanGene.LENGTH) head(dm2.nscanGene.LENGTH)
dm2.refGene.LENGTH is an R object which maps transcripts to the length (in bp) of their mature mRNA transcripts. Where available, it will also provide the mapping between a gene ID and its associated transcripts. The data is obtained from the UCSC table browser (http://genome.ucsc.edu/cgi-bin/hgTables) using the refGene table.
The data file was made by calling downloadLengthFromUCSC(dm2, refGene) on the date on which the package was last updated.
data(dm2.refGene.LENGTH) head(dm2.refGene.LENGTH)data(dm2.refGene.LENGTH) head(dm2.refGene.LENGTH)
dm3.geneSymbol.LENGTH is an R object which maps transcripts to the length (in bp) of their mature mRNA transcripts. Where available, it will also provide the mapping between a gene ID and its associated transcripts. The data is obtained from the UCSC table browser (http://genome.ucsc.edu/cgi-bin/hgTables) using the geneSymbol table.
The data file was made by calling downloadLengthFromUCSC(dm3, geneSymbol) on the date on which the package was last updated.
data(dm3.geneSymbol.LENGTH) head(dm3.geneSymbol.LENGTH)data(dm3.geneSymbol.LENGTH) head(dm3.geneSymbol.LENGTH)
dm3.nscanPasaGene.LENGTH is an R object which maps transcripts to the length (in bp) of their mature mRNA transcripts. Where available, it will also provide the mapping between a gene ID and its associated transcripts. The data is obtained from the UCSC table browser (http://genome.ucsc.edu/cgi-bin/hgTables) using the nscanPasaGene table.
The data file was made by calling downloadLengthFromUCSC(dm3, nscanPasaGene) on the date on which the package was last updated.
data(dm3.nscanPasaGene.LENGTH) head(dm3.nscanPasaGene.LENGTH)data(dm3.nscanPasaGene.LENGTH) head(dm3.nscanPasaGene.LENGTH)
dm3.refGene.LENGTH is an R object which maps transcripts to the length (in bp) of their mature mRNA transcripts. Where available, it will also provide the mapping between a gene ID and its associated transcripts. The data is obtained from the UCSC table browser (http://genome.ucsc.edu/cgi-bin/hgTables) using the refGene table.
The data file was made by calling downloadLengthFromUCSC(dm3, refGene) on the date on which the package was last updated.
data(dm3.refGene.LENGTH) head(dm3.refGene.LENGTH)data(dm3.refGene.LENGTH) head(dm3.refGene.LENGTH)
Attempts to download the length of each transcript for the genome and gene ID specified from the UCSC genome browser.
downloadLengthFromUCSC(genome, id)downloadLengthFromUCSC(genome, id)
genome |
A string identifying the genome that |
id |
A string identifying the gene identifier used by |
For each transcript, the UCSC genome browser is used to obtain the exon boundaries. The length of each transcript is then taken to be the sum of the lengths of all its exons. Each transcript is then associated with a gene.
The UCSC does not contain length information for all combinations of genome
and gene ID listed by supportedGeneIDs and
supportedGenomes. If downloadLengthFromUCSC fails
because your gene ID format is not supported for the genome you specified, a
list of possible ID formats for the specified genome will be listed.
A data.frame containing with three columns, the gene name, transcript identifier and the length of the transcript. Each row represents one transcript.
For some genome / gene ID combinations, no gene ID will be provided by
UCSC. In this case, the gene name column is set to NA. However, the
transcript ID column will always be populated.
Matthew D. Young [email protected]
supportedGenomes, supportedGeneIDs
## Not run: flat_length <- downloadLengthFromUCSC('hg19', 'ensGene') ## End(Not run)## Not run: flat_length <- downloadLengthFromUCSC('hg19', 'ensGene') ## End(Not run)
dp2.genscan.LENGTH is an R object which maps transcripts to the length (in bp) of their mature mRNA transcripts. Where available, it will also provide the mapping between a gene ID and its associated transcripts. The data is obtained from the UCSC table browser (http://genome.ucsc.edu/cgi-bin/hgTables) using the genscan table.
The data file was made by calling downloadLengthFromUCSC(dp2, genscan) on the date on which the package was last updated.
data(dp2.genscan.LENGTH) head(dp2.genscan.LENGTH)data(dp2.genscan.LENGTH) head(dp2.genscan.LENGTH)
dp2.xenoRefGene.LENGTH is an R object which maps transcripts to the length (in bp) of their mature mRNA transcripts. Where available, it will also provide the mapping between a gene ID and its associated transcripts. The data is obtained from the UCSC table browser (http://genome.ucsc.edu/cgi-bin/hgTables) using the xenoRefGene table.
The data file was made by calling downloadLengthFromUCSC(dp2, xenoRefGene) on the date on which the package was last updated.
data(dp2.xenoRefGene.LENGTH) head(dp2.xenoRefGene.LENGTH)data(dp2.xenoRefGene.LENGTH) head(dp2.xenoRefGene.LENGTH)
dp3.geneid.LENGTH is an R object which maps transcripts to the length (in bp) of their mature mRNA transcripts. Where available, it will also provide the mapping between a gene ID and its associated transcripts. The data is obtained from the UCSC table browser (http://genome.ucsc.edu/cgi-bin/hgTables) using the geneid table.
The data file was made by calling downloadLengthFromUCSC(dp3, geneid) on the date on which the package was last updated.
data(dp3.geneid.LENGTH) head(dp3.geneid.LENGTH)data(dp3.geneid.LENGTH) head(dp3.geneid.LENGTH)
dp3.genscan.LENGTH is an R object which maps transcripts to the length (in bp) of their mature mRNA transcripts. Where available, it will also provide the mapping between a gene ID and its associated transcripts. The data is obtained from the UCSC table browser (http://genome.ucsc.edu/cgi-bin/hgTables) using the genscan table.
The data file was made by calling downloadLengthFromUCSC(dp3, genscan) on the date on which the package was last updated.
data(dp3.genscan.LENGTH) head(dp3.genscan.LENGTH)data(dp3.genscan.LENGTH) head(dp3.genscan.LENGTH)
dp3.xenoRefGene.LENGTH is an R object which maps transcripts to the length (in bp) of their mature mRNA transcripts. Where available, it will also provide the mapping between a gene ID and its associated transcripts. The data is obtained from the UCSC table browser (http://genome.ucsc.edu/cgi-bin/hgTables) using the xenoRefGene table.
The data file was made by calling downloadLengthFromUCSC(dp3, xenoRefGene) on the date on which the package was last updated.
data(dp3.xenoRefGene.LENGTH) head(dp3.xenoRefGene.LENGTH)data(dp3.xenoRefGene.LENGTH) head(dp3.xenoRefGene.LENGTH)
droAna1.geneid.LENGTH is an R object which maps transcripts to the length (in bp) of their mature mRNA transcripts. Where available, it will also provide the mapping between a gene ID and its associated transcripts. The data is obtained from the UCSC table browser (http://genome.ucsc.edu/cgi-bin/hgTables) using the geneid table.
The data file was made by calling downloadLengthFromUCSC(droAna1, geneid) on the date on which the package was last updated.
data(droAna1.geneid.LENGTH) head(droAna1.geneid.LENGTH)data(droAna1.geneid.LENGTH) head(droAna1.geneid.LENGTH)
droAna1.genscan.LENGTH is an R object which maps transcripts to the length (in bp) of their mature mRNA transcripts. Where available, it will also provide the mapping between a gene ID and its associated transcripts. The data is obtained from the UCSC table browser (http://genome.ucsc.edu/cgi-bin/hgTables) using the genscan table.
The data file was made by calling downloadLengthFromUCSC(droAna1, genscan) on the date on which the package was last updated.
data(droAna1.genscan.LENGTH) head(droAna1.genscan.LENGTH)data(droAna1.genscan.LENGTH) head(droAna1.genscan.LENGTH)
droAna1.xenoRefGene.LENGTH is an R object which maps transcripts to the length (in bp) of their mature mRNA transcripts. Where available, it will also provide the mapping between a gene ID and its associated transcripts. The data is obtained from the UCSC table browser (http://genome.ucsc.edu/cgi-bin/hgTables) using the xenoRefGene table.
The data file was made by calling downloadLengthFromUCSC(droAna1, xenoRefGene) on the date on which the package was last updated.
data(droAna1.xenoRefGene.LENGTH) head(droAna1.xenoRefGene.LENGTH)data(droAna1.xenoRefGene.LENGTH) head(droAna1.xenoRefGene.LENGTH)
droAna2.genscan.LENGTH is an R object which maps transcripts to the length (in bp) of their mature mRNA transcripts. Where available, it will also provide the mapping between a gene ID and its associated transcripts. The data is obtained from the UCSC table browser (http://genome.ucsc.edu/cgi-bin/hgTables) using the genscan table.
The data file was made by calling downloadLengthFromUCSC(droAna2, genscan) on the date on which the package was last updated.
data(droAna2.genscan.LENGTH) head(droAna2.genscan.LENGTH)data(droAna2.genscan.LENGTH) head(droAna2.genscan.LENGTH)
droAna2.xenoRefGene.LENGTH is an R object which maps transcripts to the length (in bp) of their mature mRNA transcripts. Where available, it will also provide the mapping between a gene ID and its associated transcripts. The data is obtained from the UCSC table browser (http://genome.ucsc.edu/cgi-bin/hgTables) using the xenoRefGene table.
The data file was made by calling downloadLengthFromUCSC(droAna2, xenoRefGene) on the date on which the package was last updated.
data(droAna2.xenoRefGene.LENGTH) head(droAna2.xenoRefGene.LENGTH)data(droAna2.xenoRefGene.LENGTH) head(droAna2.xenoRefGene.LENGTH)
droEre1.genscan.LENGTH is an R object which maps transcripts to the length (in bp) of their mature mRNA transcripts. Where available, it will also provide the mapping between a gene ID and its associated transcripts. The data is obtained from the UCSC table browser (http://genome.ucsc.edu/cgi-bin/hgTables) using the genscan table.
The data file was made by calling downloadLengthFromUCSC(droEre1, genscan) on the date on which the package was last updated.
data(droEre1.genscan.LENGTH) head(droEre1.genscan.LENGTH)data(droEre1.genscan.LENGTH) head(droEre1.genscan.LENGTH)
droEre1.xenoRefGene.LENGTH is an R object which maps transcripts to the length (in bp) of their mature mRNA transcripts. Where available, it will also provide the mapping between a gene ID and its associated transcripts. The data is obtained from the UCSC table browser (http://genome.ucsc.edu/cgi-bin/hgTables) using the xenoRefGene table.
The data file was made by calling downloadLengthFromUCSC(droEre1, xenoRefGene) on the date on which the package was last updated.
data(droEre1.xenoRefGene.LENGTH) head(droEre1.xenoRefGene.LENGTH)data(droEre1.xenoRefGene.LENGTH) head(droEre1.xenoRefGene.LENGTH)
droGri1.genscan.LENGTH is an R object which maps transcripts to the length (in bp) of their mature mRNA transcripts. Where available, it will also provide the mapping between a gene ID and its associated transcripts. The data is obtained from the UCSC table browser (http://genome.ucsc.edu/cgi-bin/hgTables) using the genscan table.
The data file was made by calling downloadLengthFromUCSC(droGri1, genscan) on the date on which the package was last updated.
data(droGri1.genscan.LENGTH) head(droGri1.genscan.LENGTH)data(droGri1.genscan.LENGTH) head(droGri1.genscan.LENGTH)
droGri1.xenoRefGene.LENGTH is an R object which maps transcripts to the length (in bp) of their mature mRNA transcripts. Where available, it will also provide the mapping between a gene ID and its associated transcripts. The data is obtained from the UCSC table browser (http://genome.ucsc.edu/cgi-bin/hgTables) using the xenoRefGene table.
The data file was made by calling downloadLengthFromUCSC(droGri1, xenoRefGene) on the date on which the package was last updated.
data(droGri1.xenoRefGene.LENGTH) head(droGri1.xenoRefGene.LENGTH)data(droGri1.xenoRefGene.LENGTH) head(droGri1.xenoRefGene.LENGTH)
droMoj1.geneid.LENGTH is an R object which maps transcripts to the length (in bp) of their mature mRNA transcripts. Where available, it will also provide the mapping between a gene ID and its associated transcripts. The data is obtained from the UCSC table browser (http://genome.ucsc.edu/cgi-bin/hgTables) using the geneid table.
The data file was made by calling downloadLengthFromUCSC(droMoj1, geneid) on the date on which the package was last updated.
data(droMoj1.geneid.LENGTH) head(droMoj1.geneid.LENGTH)data(droMoj1.geneid.LENGTH) head(droMoj1.geneid.LENGTH)
droMoj1.genscan.LENGTH is an R object which maps transcripts to the length (in bp) of their mature mRNA transcripts. Where available, it will also provide the mapping between a gene ID and its associated transcripts. The data is obtained from the UCSC table browser (http://genome.ucsc.edu/cgi-bin/hgTables) using the genscan table.
The data file was made by calling downloadLengthFromUCSC(droMoj1, genscan) on the date on which the package was last updated.
data(droMoj1.genscan.LENGTH) head(droMoj1.genscan.LENGTH)data(droMoj1.genscan.LENGTH) head(droMoj1.genscan.LENGTH)
droMoj1.xenoRefGene.LENGTH is an R object which maps transcripts to the length (in bp) of their mature mRNA transcripts. Where available, it will also provide the mapping between a gene ID and its associated transcripts. The data is obtained from the UCSC table browser (http://genome.ucsc.edu/cgi-bin/hgTables) using the xenoRefGene table.
The data file was made by calling downloadLengthFromUCSC(droMoj1, xenoRefGene) on the date on which the package was last updated.
data(droMoj1.xenoRefGene.LENGTH) head(droMoj1.xenoRefGene.LENGTH)data(droMoj1.xenoRefGene.LENGTH) head(droMoj1.xenoRefGene.LENGTH)
droMoj2.genscan.LENGTH is an R object which maps transcripts to the length (in bp) of their mature mRNA transcripts. Where available, it will also provide the mapping between a gene ID and its associated transcripts. The data is obtained from the UCSC table browser (http://genome.ucsc.edu/cgi-bin/hgTables) using the genscan table.
The data file was made by calling downloadLengthFromUCSC(droMoj2, genscan) on the date on which the package was last updated.
data(droMoj2.genscan.LENGTH) head(droMoj2.genscan.LENGTH)data(droMoj2.genscan.LENGTH) head(droMoj2.genscan.LENGTH)
droMoj2.xenoRefGene.LENGTH is an R object which maps transcripts to the length (in bp) of their mature mRNA transcripts. Where available, it will also provide the mapping between a gene ID and its associated transcripts. The data is obtained from the UCSC table browser (http://genome.ucsc.edu/cgi-bin/hgTables) using the xenoRefGene table.
The data file was made by calling downloadLengthFromUCSC(droMoj2, xenoRefGene) on the date on which the package was last updated.
data(droMoj2.xenoRefGene.LENGTH) head(droMoj2.xenoRefGene.LENGTH)data(droMoj2.xenoRefGene.LENGTH) head(droMoj2.xenoRefGene.LENGTH)
droPer1.genscan.LENGTH is an R object which maps transcripts to the length (in bp) of their mature mRNA transcripts. Where available, it will also provide the mapping between a gene ID and its associated transcripts. The data is obtained from the UCSC table browser (http://genome.ucsc.edu/cgi-bin/hgTables) using the genscan table.
The data file was made by calling downloadLengthFromUCSC(droPer1, genscan) on the date on which the package was last updated.
data(droPer1.genscan.LENGTH) head(droPer1.genscan.LENGTH)data(droPer1.genscan.LENGTH) head(droPer1.genscan.LENGTH)
droPer1.xenoRefGene.LENGTH is an R object which maps transcripts to the length (in bp) of their mature mRNA transcripts. Where available, it will also provide the mapping between a gene ID and its associated transcripts. The data is obtained from the UCSC table browser (http://genome.ucsc.edu/cgi-bin/hgTables) using the xenoRefGene table.
The data file was made by calling downloadLengthFromUCSC(droPer1, xenoRefGene) on the date on which the package was last updated.
data(droPer1.xenoRefGene.LENGTH) head(droPer1.xenoRefGene.LENGTH)data(droPer1.xenoRefGene.LENGTH) head(droPer1.xenoRefGene.LENGTH)
droSec1.genscan.LENGTH is an R object which maps transcripts to the length (in bp) of their mature mRNA transcripts. Where available, it will also provide the mapping between a gene ID and its associated transcripts. The data is obtained from the UCSC table browser (http://genome.ucsc.edu/cgi-bin/hgTables) using the genscan table.
The data file was made by calling downloadLengthFromUCSC(droSec1, genscan) on the date on which the package was last updated.
data(droSec1.genscan.LENGTH) head(droSec1.genscan.LENGTH)data(droSec1.genscan.LENGTH) head(droSec1.genscan.LENGTH)
droSec1.xenoRefGene.LENGTH is an R object which maps transcripts to the length (in bp) of their mature mRNA transcripts. Where available, it will also provide the mapping between a gene ID and its associated transcripts. The data is obtained from the UCSC table browser (http://genome.ucsc.edu/cgi-bin/hgTables) using the xenoRefGene table.
The data file was made by calling downloadLengthFromUCSC(droSec1, xenoRefGene) on the date on which the package was last updated.
data(droSec1.xenoRefGene.LENGTH) head(droSec1.xenoRefGene.LENGTH)data(droSec1.xenoRefGene.LENGTH) head(droSec1.xenoRefGene.LENGTH)
droSim1.geneid.LENGTH is an R object which maps transcripts to the length (in bp) of their mature mRNA transcripts. Where available, it will also provide the mapping between a gene ID and its associated transcripts. The data is obtained from the UCSC table browser (http://genome.ucsc.edu/cgi-bin/hgTables) using the geneid table.
The data file was made by calling downloadLengthFromUCSC(droSim1, geneid) on the date on which the package was last updated.
data(droSim1.geneid.LENGTH) head(droSim1.geneid.LENGTH)data(droSim1.geneid.LENGTH) head(droSim1.geneid.LENGTH)
droSim1.genscan.LENGTH is an R object which maps transcripts to the length (in bp) of their mature mRNA transcripts. Where available, it will also provide the mapping between a gene ID and its associated transcripts. The data is obtained from the UCSC table browser (http://genome.ucsc.edu/cgi-bin/hgTables) using the genscan table.
The data file was made by calling downloadLengthFromUCSC(droSim1, genscan) on the date on which the package was last updated.
data(droSim1.genscan.LENGTH) head(droSim1.genscan.LENGTH)data(droSim1.genscan.LENGTH) head(droSim1.genscan.LENGTH)
droSim1.xenoRefGene.LENGTH is an R object which maps transcripts to the length (in bp) of their mature mRNA transcripts. Where available, it will also provide the mapping between a gene ID and its associated transcripts. The data is obtained from the UCSC table browser (http://genome.ucsc.edu/cgi-bin/hgTables) using the xenoRefGene table.
The data file was made by calling downloadLengthFromUCSC(droSim1, xenoRefGene) on the date on which the package was last updated.
data(droSim1.xenoRefGene.LENGTH) head(droSim1.xenoRefGene.LENGTH)data(droSim1.xenoRefGene.LENGTH) head(droSim1.xenoRefGene.LENGTH)
droVir1.geneid.LENGTH is an R object which maps transcripts to the length (in bp) of their mature mRNA transcripts. Where available, it will also provide the mapping between a gene ID and its associated transcripts. The data is obtained from the UCSC table browser (http://genome.ucsc.edu/cgi-bin/hgTables) using the geneid table.
The data file was made by calling downloadLengthFromUCSC(droVir1, geneid) on the date on which the package was last updated.
data(droVir1.geneid.LENGTH) head(droVir1.geneid.LENGTH)data(droVir1.geneid.LENGTH) head(droVir1.geneid.LENGTH)
droVir1.genscan.LENGTH is an R object which maps transcripts to the length (in bp) of their mature mRNA transcripts. Where available, it will also provide the mapping between a gene ID and its associated transcripts. The data is obtained from the UCSC table browser (http://genome.ucsc.edu/cgi-bin/hgTables) using the genscan table.
The data file was made by calling downloadLengthFromUCSC(droVir1, genscan) on the date on which the package was last updated.
data(droVir1.genscan.LENGTH) head(droVir1.genscan.LENGTH)data(droVir1.genscan.LENGTH) head(droVir1.genscan.LENGTH)
droVir1.xenoRefGene.LENGTH is an R object which maps transcripts to the length (in bp) of their mature mRNA transcripts. Where available, it will also provide the mapping between a gene ID and its associated transcripts. The data is obtained from the UCSC table browser (http://genome.ucsc.edu/cgi-bin/hgTables) using the xenoRefGene table.
The data file was made by calling downloadLengthFromUCSC(droVir1, xenoRefGene) on the date on which the package was last updated.
data(droVir1.xenoRefGene.LENGTH) head(droVir1.xenoRefGene.LENGTH)data(droVir1.xenoRefGene.LENGTH) head(droVir1.xenoRefGene.LENGTH)
droVir2.genscan.LENGTH is an R object which maps transcripts to the length (in bp) of their mature mRNA transcripts. Where available, it will also provide the mapping between a gene ID and its associated transcripts. The data is obtained from the UCSC table browser (http://genome.ucsc.edu/cgi-bin/hgTables) using the genscan table.
The data file was made by calling downloadLengthFromUCSC(droVir2, genscan) on the date on which the package was last updated.
data(droVir2.genscan.LENGTH) head(droVir2.genscan.LENGTH)data(droVir2.genscan.LENGTH) head(droVir2.genscan.LENGTH)
droVir2.xenoRefGene.LENGTH is an R object which maps transcripts to the length (in bp) of their mature mRNA transcripts. Where available, it will also provide the mapping between a gene ID and its associated transcripts. The data is obtained from the UCSC table browser (http://genome.ucsc.edu/cgi-bin/hgTables) using the xenoRefGene table.
The data file was made by calling downloadLengthFromUCSC(droVir2, xenoRefGene) on the date on which the package was last updated.
data(droVir2.xenoRefGene.LENGTH) head(droVir2.xenoRefGene.LENGTH)data(droVir2.xenoRefGene.LENGTH) head(droVir2.xenoRefGene.LENGTH)
droYak1.geneid.LENGTH is an R object which maps transcripts to the length (in bp) of their mature mRNA transcripts. Where available, it will also provide the mapping between a gene ID and its associated transcripts. The data is obtained from the UCSC table browser (http://genome.ucsc.edu/cgi-bin/hgTables) using the geneid table.
The data file was made by calling downloadLengthFromUCSC(droYak1, geneid) on the date on which the package was last updated.
data(droYak1.geneid.LENGTH) head(droYak1.geneid.LENGTH)data(droYak1.geneid.LENGTH) head(droYak1.geneid.LENGTH)
droYak1.genscan.LENGTH is an R object which maps transcripts to the length (in bp) of their mature mRNA transcripts. Where available, it will also provide the mapping between a gene ID and its associated transcripts. The data is obtained from the UCSC table browser (http://genome.ucsc.edu/cgi-bin/hgTables) using the genscan table.
The data file was made by calling downloadLengthFromUCSC(droYak1, genscan) on the date on which the package was last updated.
data(droYak1.genscan.LENGTH) head(droYak1.genscan.LENGTH)data(droYak1.genscan.LENGTH) head(droYak1.genscan.LENGTH)
droYak1.xenoRefGene.LENGTH is an R object which maps transcripts to the length (in bp) of their mature mRNA transcripts. Where available, it will also provide the mapping between a gene ID and its associated transcripts. The data is obtained from the UCSC table browser (http://genome.ucsc.edu/cgi-bin/hgTables) using the xenoRefGene table.
The data file was made by calling downloadLengthFromUCSC(droYak1, xenoRefGene) on the date on which the package was last updated.
data(droYak1.xenoRefGene.LENGTH) head(droYak1.xenoRefGene.LENGTH)data(droYak1.xenoRefGene.LENGTH) head(droYak1.xenoRefGene.LENGTH)
droYak2.genscan.LENGTH is an R object which maps transcripts to the length (in bp) of their mature mRNA transcripts. Where available, it will also provide the mapping between a gene ID and its associated transcripts. The data is obtained from the UCSC table browser (http://genome.ucsc.edu/cgi-bin/hgTables) using the genscan table.
The data file was made by calling downloadLengthFromUCSC(droYak2, genscan) on the date on which the package was last updated.
data(droYak2.genscan.LENGTH) head(droYak2.genscan.LENGTH)data(droYak2.genscan.LENGTH) head(droYak2.genscan.LENGTH)
droYak2.xenoRefGene.LENGTH is an R object which maps transcripts to the length (in bp) of their mature mRNA transcripts. Where available, it will also provide the mapping between a gene ID and its associated transcripts. The data is obtained from the UCSC table browser (http://genome.ucsc.edu/cgi-bin/hgTables) using the xenoRefGene table.
The data file was made by calling downloadLengthFromUCSC(droYak2, xenoRefGene) on the date on which the package was last updated.
data(droYak2.xenoRefGene.LENGTH) head(droYak2.xenoRefGene.LENGTH)data(droYak2.xenoRefGene.LENGTH) head(droYak2.xenoRefGene.LENGTH)
equCab1.geneid.LENGTH is an R object which maps transcripts to the length (in bp) of their mature mRNA transcripts. Where available, it will also provide the mapping between a gene ID and its associated transcripts. The data is obtained from the UCSC table browser (http://genome.ucsc.edu/cgi-bin/hgTables) using the geneid table.
The data file was made by calling downloadLengthFromUCSC(equCab1, geneid) on the date on which the package was last updated.
data(equCab1.geneid.LENGTH) head(equCab1.geneid.LENGTH)data(equCab1.geneid.LENGTH) head(equCab1.geneid.LENGTH)
equCab1.geneSymbol.LENGTH is an R object which maps transcripts to the length (in bp) of their mature mRNA transcripts. Where available, it will also provide the mapping between a gene ID and its associated transcripts. The data is obtained from the UCSC table browser (http://genome.ucsc.edu/cgi-bin/hgTables) using the geneSymbol table.
The data file was made by calling downloadLengthFromUCSC(equCab1, geneSymbol) on the date on which the package was last updated.
data(equCab1.geneSymbol.LENGTH) head(equCab1.geneSymbol.LENGTH)data(equCab1.geneSymbol.LENGTH) head(equCab1.geneSymbol.LENGTH)
equCab1.nscanGene.LENGTH is an R object which maps transcripts to the length (in bp) of their mature mRNA transcripts. Where available, it will also provide the mapping between a gene ID and its associated transcripts. The data is obtained from the UCSC table browser (http://genome.ucsc.edu/cgi-bin/hgTables) using the nscanGene table.
The data file was made by calling downloadLengthFromUCSC(equCab1, nscanGene) on the date on which the package was last updated.
data(equCab1.nscanGene.LENGTH) head(equCab1.nscanGene.LENGTH)data(equCab1.nscanGene.LENGTH) head(equCab1.nscanGene.LENGTH)
equCab1.refGene.LENGTH is an R object which maps transcripts to the length (in bp) of their mature mRNA transcripts. Where available, it will also provide the mapping between a gene ID and its associated transcripts. The data is obtained from the UCSC table browser (http://genome.ucsc.edu/cgi-bin/hgTables) using the refGene table.
The data file was made by calling downloadLengthFromUCSC(equCab1, refGene) on the date on which the package was last updated.
data(equCab1.refGene.LENGTH) head(equCab1.refGene.LENGTH)data(equCab1.refGene.LENGTH) head(equCab1.refGene.LENGTH)
equCab1.sgpGene.LENGTH is an R object which maps transcripts to the length (in bp) of their mature mRNA transcripts. Where available, it will also provide the mapping between a gene ID and its associated transcripts. The data is obtained from the UCSC table browser (http://genome.ucsc.edu/cgi-bin/hgTables) using the sgpGene table.
The data file was made by calling downloadLengthFromUCSC(equCab1, sgpGene) on the date on which the package was last updated.
data(equCab1.sgpGene.LENGTH) head(equCab1.sgpGene.LENGTH)data(equCab1.sgpGene.LENGTH) head(equCab1.sgpGene.LENGTH)
equCab2.ensGene.LENGTH is an R object which maps transcripts to the length (in bp) of their mature mRNA transcripts. Where available, it will also provide the mapping between a gene ID and its associated transcripts. The data is obtained from the UCSC table browser (http://genome.ucsc.edu/cgi-bin/hgTables) using the ensGene table.
The data file was made by calling downloadLengthFromUCSC(equCab2, ensGene) on the date on which the package was last updated.
data(equCab2.ensGene.LENGTH) head(equCab2.ensGene.LENGTH)data(equCab2.ensGene.LENGTH) head(equCab2.ensGene.LENGTH)
equCab2.geneSymbol.LENGTH is an R object which maps transcripts to the length (in bp) of their mature mRNA transcripts. Where available, it will also provide the mapping between a gene ID and its associated transcripts. The data is obtained from the UCSC table browser (http://genome.ucsc.edu/cgi-bin/hgTables) using the geneSymbol table.
The data file was made by calling downloadLengthFromUCSC(equCab2, geneSymbol) on the date on which the package was last updated.
data(equCab2.geneSymbol.LENGTH) head(equCab2.geneSymbol.LENGTH)data(equCab2.geneSymbol.LENGTH) head(equCab2.geneSymbol.LENGTH)
equCab2.nscanGene.LENGTH is an R object which maps transcripts to the length (in bp) of their mature mRNA transcripts. Where available, it will also provide the mapping between a gene ID and its associated transcripts. The data is obtained from the UCSC table browser (http://genome.ucsc.edu/cgi-bin/hgTables) using the nscanGene table.
The data file was made by calling downloadLengthFromUCSC(equCab2, nscanGene) on the date on which the package was last updated.
data(equCab2.nscanGene.LENGTH) head(equCab2.nscanGene.LENGTH)data(equCab2.nscanGene.LENGTH) head(equCab2.nscanGene.LENGTH)
equCab2.refGene.LENGTH is an R object which maps transcripts to the length (in bp) of their mature mRNA transcripts. Where available, it will also provide the mapping between a gene ID and its associated transcripts. The data is obtained from the UCSC table browser (http://genome.ucsc.edu/cgi-bin/hgTables) using the refGene table.
The data file was made by calling downloadLengthFromUCSC(equCab2, refGene) on the date on which the package was last updated.
data(equCab2.refGene.LENGTH) head(equCab2.refGene.LENGTH)data(equCab2.refGene.LENGTH) head(equCab2.refGene.LENGTH)
equCab2.xenoRefGene.LENGTH is an R object which maps transcripts to the length (in bp) of their mature mRNA transcripts. Where available, it will also provide the mapping between a gene ID and its associated transcripts. The data is obtained from the UCSC table browser (http://genome.ucsc.edu/cgi-bin/hgTables) using the xenoRefGene table.
The data file was made by calling downloadLengthFromUCSC(equCab2, xenoRefGene) on the date on which the package was last updated.
data(equCab2.xenoRefGene.LENGTH) head(equCab2.xenoRefGene.LENGTH)data(equCab2.xenoRefGene.LENGTH) head(equCab2.xenoRefGene.LENGTH)
felCat3.ensGene.LENGTH is an R object which maps transcripts to the length (in bp) of their mature mRNA transcripts. Where available, it will also provide the mapping between a gene ID and its associated transcripts. The data is obtained from the UCSC table browser (http://genome.ucsc.edu/cgi-bin/hgTables) using the ensGene table.
The data file was made by calling downloadLengthFromUCSC(felCat3, ensGene) on the date on which the package was last updated.
data(felCat3.ensGene.LENGTH) head(felCat3.ensGene.LENGTH)data(felCat3.ensGene.LENGTH) head(felCat3.ensGene.LENGTH)
felCat3.geneid.LENGTH is an R object which maps transcripts to the length (in bp) of their mature mRNA transcripts. Where available, it will also provide the mapping between a gene ID and its associated transcripts. The data is obtained from the UCSC table browser (http://genome.ucsc.edu/cgi-bin/hgTables) using the geneid table.
The data file was made by calling downloadLengthFromUCSC(felCat3, geneid) on the date on which the package was last updated.
data(felCat3.geneid.LENGTH) head(felCat3.geneid.LENGTH)data(felCat3.geneid.LENGTH) head(felCat3.geneid.LENGTH)
felCat3.geneSymbol.LENGTH is an R object which maps transcripts to the length (in bp) of their mature mRNA transcripts. Where available, it will also provide the mapping between a gene ID and its associated transcripts. The data is obtained from the UCSC table browser (http://genome.ucsc.edu/cgi-bin/hgTables) using the geneSymbol table.
The data file was made by calling downloadLengthFromUCSC(felCat3, geneSymbol) on the date on which the package was last updated.
data(felCat3.geneSymbol.LENGTH) head(felCat3.geneSymbol.LENGTH)data(felCat3.geneSymbol.LENGTH) head(felCat3.geneSymbol.LENGTH)
felCat3.genscan.LENGTH is an R object which maps transcripts to the length (in bp) of their mature mRNA transcripts. Where available, it will also provide the mapping between a gene ID and its associated transcripts. The data is obtained from the UCSC table browser (http://genome.ucsc.edu/cgi-bin/hgTables) using the genscan table.
The data file was made by calling downloadLengthFromUCSC(felCat3, genscan) on the date on which the package was last updated.
data(felCat3.genscan.LENGTH) head(felCat3.genscan.LENGTH)data(felCat3.genscan.LENGTH) head(felCat3.genscan.LENGTH)
felCat3.nscanGene.LENGTH is an R object which maps transcripts to the length (in bp) of their mature mRNA transcripts. Where available, it will also provide the mapping between a gene ID and its associated transcripts. The data is obtained from the UCSC table browser (http://genome.ucsc.edu/cgi-bin/hgTables) using the nscanGene table.
The data file was made by calling downloadLengthFromUCSC(felCat3, nscanGene) on the date on which the package was last updated.
data(felCat3.nscanGene.LENGTH) head(felCat3.nscanGene.LENGTH)data(felCat3.nscanGene.LENGTH) head(felCat3.nscanGene.LENGTH)
felCat3.refGene.LENGTH is an R object which maps transcripts to the length (in bp) of their mature mRNA transcripts. Where available, it will also provide the mapping between a gene ID and its associated transcripts. The data is obtained from the UCSC table browser (http://genome.ucsc.edu/cgi-bin/hgTables) using the refGene table.
The data file was made by calling downloadLengthFromUCSC(felCat3, refGene) on the date on which the package was last updated.
data(felCat3.refGene.LENGTH) head(felCat3.refGene.LENGTH)data(felCat3.refGene.LENGTH) head(felCat3.refGene.LENGTH)
felCat3.sgpGene.LENGTH is an R object which maps transcripts to the length (in bp) of their mature mRNA transcripts. Where available, it will also provide the mapping between a gene ID and its associated transcripts. The data is obtained from the UCSC table browser (http://genome.ucsc.edu/cgi-bin/hgTables) using the sgpGene table.
The data file was made by calling downloadLengthFromUCSC(felCat3, sgpGene) on the date on which the package was last updated.
data(felCat3.sgpGene.LENGTH) head(felCat3.sgpGene.LENGTH)data(felCat3.sgpGene.LENGTH) head(felCat3.sgpGene.LENGTH)
felCat3.xenoRefGene.LENGTH is an R object which maps transcripts to the length (in bp) of their mature mRNA transcripts. Where available, it will also provide the mapping between a gene ID and its associated transcripts. The data is obtained from the UCSC table browser (http://genome.ucsc.edu/cgi-bin/hgTables) using the xenoRefGene table.
The data file was made by calling downloadLengthFromUCSC(felCat3, xenoRefGene) on the date on which the package was last updated.
data(felCat3.xenoRefGene.LENGTH) head(felCat3.xenoRefGene.LENGTH)data(felCat3.xenoRefGene.LENGTH) head(felCat3.xenoRefGene.LENGTH)
fr1.ensGene.LENGTH is an R object which maps transcripts to the length (in bp) of their mature mRNA transcripts. Where available, it will also provide the mapping between a gene ID and its associated transcripts. The data is obtained from the UCSC table browser (http://genome.ucsc.edu/cgi-bin/hgTables) using the ensGene table.
The data file was made by calling downloadLengthFromUCSC(fr1, ensGene) on the date on which the package was last updated.
data(fr1.ensGene.LENGTH) head(fr1.ensGene.LENGTH)data(fr1.ensGene.LENGTH) head(fr1.ensGene.LENGTH)
fr1.genscan.LENGTH is an R object which maps transcripts to the length (in bp) of their mature mRNA transcripts. Where available, it will also provide the mapping between a gene ID and its associated transcripts. The data is obtained from the UCSC table browser (http://genome.ucsc.edu/cgi-bin/hgTables) using the genscan table.
The data file was made by calling downloadLengthFromUCSC(fr1, genscan) on the date on which the package was last updated.
data(fr1.genscan.LENGTH) head(fr1.genscan.LENGTH)data(fr1.genscan.LENGTH) head(fr1.genscan.LENGTH)
fr2.ensGene.LENGTH is an R object which maps transcripts to the length (in bp) of their mature mRNA transcripts. Where available, it will also provide the mapping between a gene ID and its associated transcripts. The data is obtained from the UCSC table browser (http://genome.ucsc.edu/cgi-bin/hgTables) using the ensGene table.
The data file was made by calling downloadLengthFromUCSC(fr2, ensGene) on the date on which the package was last updated.
data(fr2.ensGene.LENGTH) head(fr2.ensGene.LENGTH)data(fr2.ensGene.LENGTH) head(fr2.ensGene.LENGTH)
galGal2.ensGene.LENGTH is an R object which maps transcripts to the length (in bp) of their mature mRNA transcripts. Where available, it will also provide the mapping between a gene ID and its associated transcripts. The data is obtained from the UCSC table browser (http://genome.ucsc.edu/cgi-bin/hgTables) using the ensGene table.
The data file was made by calling downloadLengthFromUCSC(galGal2, ensGene) on the date on which the package was last updated.
data(galGal2.ensGene.LENGTH) head(galGal2.ensGene.LENGTH)data(galGal2.ensGene.LENGTH) head(galGal2.ensGene.LENGTH)
galGal2.geneid.LENGTH is an R object which maps transcripts to the length (in bp) of their mature mRNA transcripts. Where available, it will also provide the mapping between a gene ID and its associated transcripts. The data is obtained from the UCSC table browser (http://genome.ucsc.edu/cgi-bin/hgTables) using the geneid table.
The data file was made by calling downloadLengthFromUCSC(galGal2, geneid) on the date on which the package was last updated.
data(galGal2.geneid.LENGTH) head(galGal2.geneid.LENGTH)data(galGal2.geneid.LENGTH) head(galGal2.geneid.LENGTH)
galGal2.geneSymbol.LENGTH is an R object which maps transcripts to the length (in bp) of their mature mRNA transcripts. Where available, it will also provide the mapping between a gene ID and its associated transcripts. The data is obtained from the UCSC table browser (http://genome.ucsc.edu/cgi-bin/hgTables) using the geneSymbol table.
The data file was made by calling downloadLengthFromUCSC(galGal2, geneSymbol) on the date on which the package was last updated.
data(galGal2.geneSymbol.LENGTH) head(galGal2.geneSymbol.LENGTH)data(galGal2.geneSymbol.LENGTH) head(galGal2.geneSymbol.LENGTH)
galGal2.genscan.LENGTH is an R object which maps transcripts to the length (in bp) of their mature mRNA transcripts. Where available, it will also provide the mapping between a gene ID and its associated transcripts. The data is obtained from the UCSC table browser (http://genome.ucsc.edu/cgi-bin/hgTables) using the genscan table.
The data file was made by calling downloadLengthFromUCSC(galGal2, genscan) on the date on which the package was last updated.
data(galGal2.genscan.LENGTH) head(galGal2.genscan.LENGTH)data(galGal2.genscan.LENGTH) head(galGal2.genscan.LENGTH)
galGal2.refGene.LENGTH is an R object which maps transcripts to the length (in bp) of their mature mRNA transcripts. Where available, it will also provide the mapping between a gene ID and its associated transcripts. The data is obtained from the UCSC table browser (http://genome.ucsc.edu/cgi-bin/hgTables) using the refGene table.
The data file was made by calling downloadLengthFromUCSC(galGal2, refGene) on the date on which the package was last updated.
data(galGal2.refGene.LENGTH) head(galGal2.refGene.LENGTH)data(galGal2.refGene.LENGTH) head(galGal2.refGene.LENGTH)
galGal2.sgpGene.LENGTH is an R object which maps transcripts to the length (in bp) of their mature mRNA transcripts. Where available, it will also provide the mapping between a gene ID and its associated transcripts. The data is obtained from the UCSC table browser (http://genome.ucsc.edu/cgi-bin/hgTables) using the sgpGene table.
The data file was made by calling downloadLengthFromUCSC(galGal2, sgpGene) on the date on which the package was last updated.
data(galGal2.sgpGene.LENGTH) head(galGal2.sgpGene.LENGTH)data(galGal2.sgpGene.LENGTH) head(galGal2.sgpGene.LENGTH)
galGal3.ensGene.LENGTH is an R object which maps transcripts to the length (in bp) of their mature mRNA transcripts. Where available, it will also provide the mapping between a gene ID and its associated transcripts. The data is obtained from the UCSC table browser (http://genome.ucsc.edu/cgi-bin/hgTables) using the ensGene table.
The data file was made by calling downloadLengthFromUCSC(galGal3, ensGene) on the date on which the package was last updated.
data(galGal3.ensGene.LENGTH) head(galGal3.ensGene.LENGTH)data(galGal3.ensGene.LENGTH) head(galGal3.ensGene.LENGTH)
galGal3.geneSymbol.LENGTH is an R object which maps transcripts to the length (in bp) of their mature mRNA transcripts. Where available, it will also provide the mapping between a gene ID and its associated transcripts. The data is obtained from the UCSC table browser (http://genome.ucsc.edu/cgi-bin/hgTables) using the geneSymbol table.
The data file was made by calling downloadLengthFromUCSC(galGal3, geneSymbol) on the date on which the package was last updated.
data(galGal3.geneSymbol.LENGTH) head(galGal3.geneSymbol.LENGTH)data(galGal3.geneSymbol.LENGTH) head(galGal3.geneSymbol.LENGTH)
galGal3.genscan.LENGTH is an R object which maps transcripts to the length (in bp) of their mature mRNA transcripts. Where available, it will also provide the mapping between a gene ID and its associated transcripts. The data is obtained from the UCSC table browser (http://genome.ucsc.edu/cgi-bin/hgTables) using the genscan table.
The data file was made by calling downloadLengthFromUCSC(galGal3, genscan) on the date on which the package was last updated.
data(galGal3.genscan.LENGTH) head(galGal3.genscan.LENGTH)data(galGal3.genscan.LENGTH) head(galGal3.genscan.LENGTH)
galGal3.nscanGene.LENGTH is an R object which maps transcripts to the length (in bp) of their mature mRNA transcripts. Where available, it will also provide the mapping between a gene ID and its associated transcripts. The data is obtained from the UCSC table browser (http://genome.ucsc.edu/cgi-bin/hgTables) using the nscanGene table.
The data file was made by calling downloadLengthFromUCSC(galGal3, nscanGene) on the date on which the package was last updated.
data(galGal3.nscanGene.LENGTH) head(galGal3.nscanGene.LENGTH)data(galGal3.nscanGene.LENGTH) head(galGal3.nscanGene.LENGTH)
galGal3.refGene.LENGTH is an R object which maps transcripts to the length (in bp) of their mature mRNA transcripts. Where available, it will also provide the mapping between a gene ID and its associated transcripts. The data is obtained from the UCSC table browser (http://genome.ucsc.edu/cgi-bin/hgTables) using the refGene table.
The data file was made by calling downloadLengthFromUCSC(galGal3, refGene) on the date on which the package was last updated.
data(galGal3.refGene.LENGTH) head(galGal3.refGene.LENGTH)data(galGal3.refGene.LENGTH) head(galGal3.refGene.LENGTH)
galGal3.xenoRefGene.LENGTH is an R object which maps transcripts to the length (in bp) of their mature mRNA transcripts. Where available, it will also provide the mapping between a gene ID and its associated transcripts. The data is obtained from the UCSC table browser (http://genome.ucsc.edu/cgi-bin/hgTables) using the xenoRefGene table.
The data file was made by calling downloadLengthFromUCSC(galGal3, xenoRefGene) on the date on which the package was last updated.
data(galGal3.xenoRefGene.LENGTH) head(galGal3.xenoRefGene.LENGTH)data(galGal3.xenoRefGene.LENGTH) head(galGal3.xenoRefGene.LENGTH)
gasAcu1.ensGene.LENGTH is an R object which maps transcripts to the length (in bp) of their mature mRNA transcripts. Where available, it will also provide the mapping between a gene ID and its associated transcripts. The data is obtained from the UCSC table browser (http://genome.ucsc.edu/cgi-bin/hgTables) using the ensGene table.
The data file was made by calling downloadLengthFromUCSC(gasAcu1, ensGene) on the date on which the package was last updated.
data(gasAcu1.ensGene.LENGTH) head(gasAcu1.ensGene.LENGTH)data(gasAcu1.ensGene.LENGTH) head(gasAcu1.ensGene.LENGTH)
gasAcu1.nscanGene.LENGTH is an R object which maps transcripts to the length (in bp) of their mature mRNA transcripts. Where available, it will also provide the mapping between a gene ID and its associated transcripts. The data is obtained from the UCSC table browser (http://genome.ucsc.edu/cgi-bin/hgTables) using the nscanGene table.
The data file was made by calling downloadLengthFromUCSC(gasAcu1, nscanGene) on the date on which the package was last updated.
data(gasAcu1.nscanGene.LENGTH) head(gasAcu1.nscanGene.LENGTH)data(gasAcu1.nscanGene.LENGTH) head(gasAcu1.nscanGene.LENGTH)
hg16.acembly.LENGTH is an R object which maps transcripts to the length (in bp) of their mature mRNA transcripts. Where available, it will also provide the mapping between a gene ID and its associated transcripts. The data is obtained from the UCSC table browser (http://genome.ucsc.edu/cgi-bin/hgTables) using the acembly table.
The data file was made by calling downloadLengthFromUCSC(hg16, acembly) on the date on which the package was last updated.
data(hg16.acembly.LENGTH) head(hg16.acembly.LENGTH)data(hg16.acembly.LENGTH) head(hg16.acembly.LENGTH)
hg16.ensGene.LENGTH is an R object which maps transcripts to the length (in bp) of their mature mRNA transcripts. Where available, it will also provide the mapping between a gene ID and its associated transcripts. The data is obtained from the UCSC table browser (http://genome.ucsc.edu/cgi-bin/hgTables) using the ensGene table.
The data file was made by calling downloadLengthFromUCSC(hg16, ensGene) on the date on which the package was last updated.
data(hg16.ensGene.LENGTH) head(hg16.ensGene.LENGTH)data(hg16.ensGene.LENGTH) head(hg16.ensGene.LENGTH)
hg16.exoniphy.LENGTH is an R object which maps transcripts to the length (in bp) of their mature mRNA transcripts. Where available, it will also provide the mapping between a gene ID and its associated transcripts. The data is obtained from the UCSC table browser (http://genome.ucsc.edu/cgi-bin/hgTables) using the exoniphy table.
The data file was made by calling downloadLengthFromUCSC(hg16, exoniphy) on the date on which the package was last updated.
data(hg16.exoniphy.LENGTH) head(hg16.exoniphy.LENGTH)data(hg16.exoniphy.LENGTH) head(hg16.exoniphy.LENGTH)
hg16.geneid.LENGTH is an R object which maps transcripts to the length (in bp) of their mature mRNA transcripts. Where available, it will also provide the mapping between a gene ID and its associated transcripts. The data is obtained from the UCSC table browser (http://genome.ucsc.edu/cgi-bin/hgTables) using the geneid table.
The data file was made by calling downloadLengthFromUCSC(hg16, geneid) on the date on which the package was last updated.
data(hg16.geneid.LENGTH) head(hg16.geneid.LENGTH)data(hg16.geneid.LENGTH) head(hg16.geneid.LENGTH)
hg16.geneSymbol.LENGTH is an R object which maps transcripts to the length (in bp) of their mature mRNA transcripts. Where available, it will also provide the mapping between a gene ID and its associated transcripts. The data is obtained from the UCSC table browser (http://genome.ucsc.edu/cgi-bin/hgTables) using the geneSymbol table.
The data file was made by calling downloadLengthFromUCSC(hg16, geneSymbol) on the date on which the package was last updated.
data(hg16.geneSymbol.LENGTH) head(hg16.geneSymbol.LENGTH)data(hg16.geneSymbol.LENGTH) head(hg16.geneSymbol.LENGTH)
hg16.genscan.LENGTH is an R object which maps transcripts to the length (in bp) of their mature mRNA transcripts. Where available, it will also provide the mapping between a gene ID and its associated transcripts. The data is obtained from the UCSC table browser (http://genome.ucsc.edu/cgi-bin/hgTables) using the genscan table.
The data file was made by calling downloadLengthFromUCSC(hg16, genscan) on the date on which the package was last updated.
data(hg16.genscan.LENGTH) head(hg16.genscan.LENGTH)data(hg16.genscan.LENGTH) head(hg16.genscan.LENGTH)
hg16.knownGene.LENGTH is an R object which maps transcripts to the length (in bp) of their mature mRNA transcripts. Where available, it will also provide the mapping between a gene ID and its associated transcripts. The data is obtained from the UCSC table browser (http://genome.ucsc.edu/cgi-bin/hgTables) using the knownGene table.
The data file was made by calling downloadLengthFromUCSC(hg16, knownGene) on the date on which the package was last updated.
data(hg16.knownGene.LENGTH) head(hg16.knownGene.LENGTH)data(hg16.knownGene.LENGTH) head(hg16.knownGene.LENGTH)
hg16.refGene.LENGTH is an R object which maps transcripts to the length (in bp) of their mature mRNA transcripts. Where available, it will also provide the mapping between a gene ID and its associated transcripts. The data is obtained from the UCSC table browser (http://genome.ucsc.edu/cgi-bin/hgTables) using the refGene table.
The data file was made by calling downloadLengthFromUCSC(hg16, refGene) on the date on which the package was last updated.
data(hg16.refGene.LENGTH) head(hg16.refGene.LENGTH)data(hg16.refGene.LENGTH) head(hg16.refGene.LENGTH)
hg16.sgpGene.LENGTH is an R object which maps transcripts to the length (in bp) of their mature mRNA transcripts. Where available, it will also provide the mapping between a gene ID and its associated transcripts. The data is obtained from the UCSC table browser (http://genome.ucsc.edu/cgi-bin/hgTables) using the sgpGene table.
The data file was made by calling downloadLengthFromUCSC(hg16, sgpGene) on the date on which the package was last updated.
data(hg16.sgpGene.LENGTH) head(hg16.sgpGene.LENGTH)data(hg16.sgpGene.LENGTH) head(hg16.sgpGene.LENGTH)
hg17.acembly.LENGTH is an R object which maps transcripts to the length (in bp) of their mature mRNA transcripts. Where available, it will also provide the mapping between a gene ID and its associated transcripts. The data is obtained from the UCSC table browser (http://genome.ucsc.edu/cgi-bin/hgTables) using the acembly table.
The data file was made by calling downloadLengthFromUCSC(hg17, acembly) on the date on which the package was last updated.
data(hg17.acembly.LENGTH) head(hg17.acembly.LENGTH)data(hg17.acembly.LENGTH) head(hg17.acembly.LENGTH)
hg17.acescan.LENGTH is an R object which maps transcripts to the length (in bp) of their mature mRNA transcripts. Where available, it will also provide the mapping between a gene ID and its associated transcripts. The data is obtained from the UCSC table browser (http://genome.ucsc.edu/cgi-bin/hgTables) using the acescan table.
The data file was made by calling downloadLengthFromUCSC(hg17, acescan) on the date on which the package was last updated.
data(hg17.acescan.LENGTH) head(hg17.acescan.LENGTH)data(hg17.acescan.LENGTH) head(hg17.acescan.LENGTH)
hg17.ccdsGene.LENGTH is an R object which maps transcripts to the length (in bp) of their mature mRNA transcripts. Where available, it will also provide the mapping between a gene ID and its associated transcripts. The data is obtained from the UCSC table browser (http://genome.ucsc.edu/cgi-bin/hgTables) using the ccdsGene table.
The data file was made by calling downloadLengthFromUCSC(hg17, ccdsGene) on the date on which the package was last updated.
data(hg17.ccdsGene.LENGTH) head(hg17.ccdsGene.LENGTH)data(hg17.ccdsGene.LENGTH) head(hg17.ccdsGene.LENGTH)
hg17.ensGene.LENGTH is an R object which maps transcripts to the length (in bp) of their mature mRNA transcripts. Where available, it will also provide the mapping between a gene ID and its associated transcripts. The data is obtained from the UCSC table browser (http://genome.ucsc.edu/cgi-bin/hgTables) using the ensGene table.
The data file was made by calling downloadLengthFromUCSC(hg17, ensGene) on the date on which the package was last updated.
data(hg17.ensGene.LENGTH) head(hg17.ensGene.LENGTH)data(hg17.ensGene.LENGTH) head(hg17.ensGene.LENGTH)
hg17.exoniphy.LENGTH is an R object which maps transcripts to the length (in bp) of their mature mRNA transcripts. Where available, it will also provide the mapping between a gene ID and its associated transcripts. The data is obtained from the UCSC table browser (http://genome.ucsc.edu/cgi-bin/hgTables) using the exoniphy table.
The data file was made by calling downloadLengthFromUCSC(hg17, exoniphy) on the date on which the package was last updated.
data(hg17.exoniphy.LENGTH) head(hg17.exoniphy.LENGTH)data(hg17.exoniphy.LENGTH) head(hg17.exoniphy.LENGTH)
hg17.geneid.LENGTH is an R object which maps transcripts to the length (in bp) of their mature mRNA transcripts. Where available, it will also provide the mapping between a gene ID and its associated transcripts. The data is obtained from the UCSC table browser (http://genome.ucsc.edu/cgi-bin/hgTables) using the geneid table.
The data file was made by calling downloadLengthFromUCSC(hg17, geneid) on the date on which the package was last updated.
data(hg17.geneid.LENGTH) head(hg17.geneid.LENGTH)data(hg17.geneid.LENGTH) head(hg17.geneid.LENGTH)
hg17.geneSymbol.LENGTH is an R object which maps transcripts to the length (in bp) of their mature mRNA transcripts. Where available, it will also provide the mapping between a gene ID and its associated transcripts. The data is obtained from the UCSC table browser (http://genome.ucsc.edu/cgi-bin/hgTables) using the geneSymbol table.
The data file was made by calling downloadLengthFromUCSC(hg17, geneSymbol) on the date on which the package was last updated.
data(hg17.geneSymbol.LENGTH) head(hg17.geneSymbol.LENGTH)data(hg17.geneSymbol.LENGTH) head(hg17.geneSymbol.LENGTH)
hg17.genscan.LENGTH is an R object which maps transcripts to the length (in bp) of their mature mRNA transcripts. Where available, it will also provide the mapping between a gene ID and its associated transcripts. The data is obtained from the UCSC table browser (http://genome.ucsc.edu/cgi-bin/hgTables) using the genscan table.
The data file was made by calling downloadLengthFromUCSC(hg17, genscan) on the date on which the package was last updated.
data(hg17.genscan.LENGTH) head(hg17.genscan.LENGTH)data(hg17.genscan.LENGTH) head(hg17.genscan.LENGTH)
hg17.knownGene.LENGTH is an R object which maps transcripts to the length (in bp) of their mature mRNA transcripts. Where available, it will also provide the mapping between a gene ID and its associated transcripts. The data is obtained from the UCSC table browser (http://genome.ucsc.edu/cgi-bin/hgTables) using the knownGene table.
The data file was made by calling downloadLengthFromUCSC(hg17, knownGene) on the date on which the package was last updated.
data(hg17.knownGene.LENGTH) head(hg17.knownGene.LENGTH)data(hg17.knownGene.LENGTH) head(hg17.knownGene.LENGTH)
hg17.refGene.LENGTH is an R object which maps transcripts to the length (in bp) of their mature mRNA transcripts. Where available, it will also provide the mapping between a gene ID and its associated transcripts. The data is obtained from the UCSC table browser (http://genome.ucsc.edu/cgi-bin/hgTables) using the refGene table.
The data file was made by calling downloadLengthFromUCSC(hg17, refGene) on the date on which the package was last updated.
data(hg17.refGene.LENGTH) head(hg17.refGene.LENGTH)data(hg17.refGene.LENGTH) head(hg17.refGene.LENGTH)
hg17.sgpGene.LENGTH is an R object which maps transcripts to the length (in bp) of their mature mRNA transcripts. Where available, it will also provide the mapping between a gene ID and its associated transcripts. The data is obtained from the UCSC table browser (http://genome.ucsc.edu/cgi-bin/hgTables) using the sgpGene table.
The data file was made by calling downloadLengthFromUCSC(hg17, sgpGene) on the date on which the package was last updated.
data(hg17.sgpGene.LENGTH) head(hg17.sgpGene.LENGTH)data(hg17.sgpGene.LENGTH) head(hg17.sgpGene.LENGTH)
hg17.vegaGene.LENGTH is an R object which maps transcripts to the length (in bp) of their mature mRNA transcripts. Where available, it will also provide the mapping between a gene ID and its associated transcripts. The data is obtained from the UCSC table browser (http://genome.ucsc.edu/cgi-bin/hgTables) using the vegaGene table.
The data file was made by calling downloadLengthFromUCSC(hg17, vegaGene) on the date on which the package was last updated.
data(hg17.vegaGene.LENGTH) head(hg17.vegaGene.LENGTH)data(hg17.vegaGene.LENGTH) head(hg17.vegaGene.LENGTH)
hg17.vegaPseudoGene.LENGTH is an R object which maps transcripts to the length (in bp) of their mature mRNA transcripts. Where available, it will also provide the mapping between a gene ID and its associated transcripts. The data is obtained from the UCSC table browser (http://genome.ucsc.edu/cgi-bin/hgTables) using the vegaPseudoGene table.
The data file was made by calling downloadLengthFromUCSC(hg17, vegaPseudoGene) on the date on which the package was last updated.
data(hg17.vegaPseudoGene.LENGTH) head(hg17.vegaPseudoGene.LENGTH)data(hg17.vegaPseudoGene.LENGTH) head(hg17.vegaPseudoGene.LENGTH)
hg17.xenoRefGene.LENGTH is an R object which maps transcripts to the length (in bp) of their mature mRNA transcripts. Where available, it will also provide the mapping between a gene ID and its associated transcripts. The data is obtained from the UCSC table browser (http://genome.ucsc.edu/cgi-bin/hgTables) using the xenoRefGene table.
The data file was made by calling downloadLengthFromUCSC(hg17, xenoRefGene) on the date on which the package was last updated.
data(hg17.xenoRefGene.LENGTH) head(hg17.xenoRefGene.LENGTH)data(hg17.xenoRefGene.LENGTH) head(hg17.xenoRefGene.LENGTH)
hg18.acembly.LENGTH is an R object which maps transcripts to the length (in bp) of their mature mRNA transcripts. Where available, it will also provide the mapping between a gene ID and its associated transcripts. The data is obtained from the UCSC table browser (http://genome.ucsc.edu/cgi-bin/hgTables) using the acembly table.
The data file was made by calling downloadLengthFromUCSC(hg18, acembly) on the date on which the package was last updated.
data(hg18.acembly.LENGTH) head(hg18.acembly.LENGTH)data(hg18.acembly.LENGTH) head(hg18.acembly.LENGTH)
hg18.acescan.LENGTH is an R object which maps transcripts to the length (in bp) of their mature mRNA transcripts. Where available, it will also provide the mapping between a gene ID and its associated transcripts. The data is obtained from the UCSC table browser (http://genome.ucsc.edu/cgi-bin/hgTables) using the acescan table.
The data file was made by calling downloadLengthFromUCSC(hg18, acescan) on the date on which the package was last updated.
data(hg18.acescan.LENGTH) head(hg18.acescan.LENGTH)data(hg18.acescan.LENGTH) head(hg18.acescan.LENGTH)
hg18.ccdsGene.LENGTH is an R object which maps transcripts to the length (in bp) of their mature mRNA transcripts. Where available, it will also provide the mapping between a gene ID and its associated transcripts. The data is obtained from the UCSC table browser (http://genome.ucsc.edu/cgi-bin/hgTables) using the ccdsGene table.
The data file was made by calling downloadLengthFromUCSC(hg18, ccdsGene) on the date on which the package was last updated.
data(hg18.ccdsGene.LENGTH) head(hg18.ccdsGene.LENGTH)data(hg18.ccdsGene.LENGTH) head(hg18.ccdsGene.LENGTH)
hg18.ensGene.LENGTH is an R object which maps transcripts to the length (in bp) of their mature mRNA transcripts. Where available, it will also provide the mapping between a gene ID and its associated transcripts. The data is obtained from the UCSC table browser (http://genome.ucsc.edu/cgi-bin/hgTables) using the ensGene table.
The data file was made by calling downloadLengthFromUCSC(hg18, ensGene) on the date on which the package was last updated.
data(hg18.ensGene.LENGTH) head(hg18.ensGene.LENGTH)data(hg18.ensGene.LENGTH) head(hg18.ensGene.LENGTH)
hg18.exoniphy.LENGTH is an R object which maps transcripts to the length (in bp) of their mature mRNA transcripts. Where available, it will also provide the mapping between a gene ID and its associated transcripts. The data is obtained from the UCSC table browser (http://genome.ucsc.edu/cgi-bin/hgTables) using the exoniphy table.
The data file was made by calling downloadLengthFromUCSC(hg18, exoniphy) on the date on which the package was last updated.
data(hg18.exoniphy.LENGTH) head(hg18.exoniphy.LENGTH)data(hg18.exoniphy.LENGTH) head(hg18.exoniphy.LENGTH)
hg18.geneid.LENGTH is an R object which maps transcripts to the length (in bp) of their mature mRNA transcripts. Where available, it will also provide the mapping between a gene ID and its associated transcripts. The data is obtained from the UCSC table browser (http://genome.ucsc.edu/cgi-bin/hgTables) using the geneid table.
The data file was made by calling downloadLengthFromUCSC(hg18, geneid) on the date on which the package was last updated.
data(hg18.geneid.LENGTH) head(hg18.geneid.LENGTH)data(hg18.geneid.LENGTH) head(hg18.geneid.LENGTH)
hg18.geneSymbol.LENGTH is an R object which maps transcripts to the length (in bp) of their mature mRNA transcripts. Where available, it will also provide the mapping between a gene ID and its associated transcripts. The data is obtained from the UCSC table browser (http://genome.ucsc.edu/cgi-bin/hgTables) using the geneSymbol table.
The data file was made by calling downloadLengthFromUCSC(hg18, geneSymbol) on the date on which the package was last updated.
data(hg18.geneSymbol.LENGTH) head(hg18.geneSymbol.LENGTH)data(hg18.geneSymbol.LENGTH) head(hg18.geneSymbol.LENGTH)
hg18.genscan.LENGTH is an R object which maps transcripts to the length (in bp) of their mature mRNA transcripts. Where available, it will also provide the mapping between a gene ID and its associated transcripts. The data is obtained from the UCSC table browser (http://genome.ucsc.edu/cgi-bin/hgTables) using the genscan table.
The data file was made by calling downloadLengthFromUCSC(hg18, genscan) on the date on which the package was last updated.
data(hg18.genscan.LENGTH) head(hg18.genscan.LENGTH)data(hg18.genscan.LENGTH) head(hg18.genscan.LENGTH)
hg18.knownGene.LENGTH is an R object which maps transcripts to the length (in bp) of their mature mRNA transcripts. Where available, it will also provide the mapping between a gene ID and its associated transcripts. The data is obtained from the UCSC table browser (http://genome.ucsc.edu/cgi-bin/hgTables) using the knownGene table.
The data file was made by calling downloadLengthFromUCSC(hg18, knownGene) on the date on which the package was last updated.
data(hg18.knownGene.LENGTH) head(hg18.knownGene.LENGTH)data(hg18.knownGene.LENGTH) head(hg18.knownGene.LENGTH)
hg18.knownGeneOld3.LENGTH is an R object which maps transcripts to the length (in bp) of their mature mRNA transcripts. Where available, it will also provide the mapping between a gene ID and its associated transcripts. The data is obtained from the UCSC table browser (http://genome.ucsc.edu/cgi-bin/hgTables) using the knownGeneOld3 table.
The data file was made by calling downloadLengthFromUCSC(hg18, knownGeneOld3) on the date on which the package was last updated.
data(hg18.knownGeneOld3.LENGTH) head(hg18.knownGeneOld3.LENGTH)data(hg18.knownGeneOld3.LENGTH) head(hg18.knownGeneOld3.LENGTH)
hg18.refGene.LENGTH is an R object which maps transcripts to the length (in bp) of their mature mRNA transcripts. Where available, it will also provide the mapping between a gene ID and its associated transcripts. The data is obtained from the UCSC table browser (http://genome.ucsc.edu/cgi-bin/hgTables) using the refGene table.
The data file was made by calling downloadLengthFromUCSC(hg18, refGene) on the date on which the package was last updated.
data(hg18.refGene.LENGTH) head(hg18.refGene.LENGTH)data(hg18.refGene.LENGTH) head(hg18.refGene.LENGTH)
hg18.sgpGene.LENGTH is an R object which maps transcripts to the length (in bp) of their mature mRNA transcripts. Where available, it will also provide the mapping between a gene ID and its associated transcripts. The data is obtained from the UCSC table browser (http://genome.ucsc.edu/cgi-bin/hgTables) using the sgpGene table.
The data file was made by calling downloadLengthFromUCSC(hg18, sgpGene) on the date on which the package was last updated.
data(hg18.sgpGene.LENGTH) head(hg18.sgpGene.LENGTH)data(hg18.sgpGene.LENGTH) head(hg18.sgpGene.LENGTH)
hg18.sibGene.LENGTH is an R object which maps transcripts to the length (in bp) of their mature mRNA transcripts. Where available, it will also provide the mapping between a gene ID and its associated transcripts. The data is obtained from the UCSC table browser (http://genome.ucsc.edu/cgi-bin/hgTables) using the sibGene table.
The data file was made by calling downloadLengthFromUCSC(hg18, sibGene) on the date on which the package was last updated.
data(hg18.sibGene.LENGTH) head(hg18.sibGene.LENGTH)data(hg18.sibGene.LENGTH) head(hg18.sibGene.LENGTH)
hg18.xenoRefGene.LENGTH is an R object which maps transcripts to the length (in bp) of their mature mRNA transcripts. Where available, it will also provide the mapping between a gene ID and its associated transcripts. The data is obtained from the UCSC table browser (http://genome.ucsc.edu/cgi-bin/hgTables) using the xenoRefGene table.
The data file was made by calling downloadLengthFromUCSC(hg18, xenoRefGene) on the date on which the package was last updated.
data(hg18.xenoRefGene.LENGTH) head(hg18.xenoRefGene.LENGTH)data(hg18.xenoRefGene.LENGTH) head(hg18.xenoRefGene.LENGTH)
hg19.ccdsGene.LENGTH is an R object which maps transcripts to the length (in bp) of their mature mRNA transcripts. Where available, it will also provide the mapping between a gene ID and its associated transcripts. The data is obtained from the UCSC table browser (http://genome.ucsc.edu/cgi-bin/hgTables) using the ccdsGene table.
The data file was made by calling downloadLengthFromUCSC(hg19, ccdsGene) on the date on which the package was last updated.
data(hg19.ccdsGene.LENGTH) head(hg19.ccdsGene.LENGTH)data(hg19.ccdsGene.LENGTH) head(hg19.ccdsGene.LENGTH)
hg19.ensGene.LENGTH is an R object which maps transcripts to the length (in bp) of their mature mRNA transcripts. Where available, it will also provide the mapping between a gene ID and its associated transcripts. The data is obtained from the UCSC table browser (http://genome.ucsc.edu/cgi-bin/hgTables) using the ensGene table.
The data file was made by calling downloadLengthFromUCSC(hg19, ensGene) on the date on which the package was last updated.
data(hg19.ensGene.LENGTH) head(hg19.ensGene.LENGTH)data(hg19.ensGene.LENGTH) head(hg19.ensGene.LENGTH)
hg19.exoniphy.LENGTH is an R object which maps transcripts to the length (in bp) of their mature mRNA transcripts. Where available, it will also provide the mapping between a gene ID and its associated transcripts. The data is obtained from the UCSC table browser (http://genome.ucsc.edu/cgi-bin/hgTables) using the exoniphy table.
The data file was made by calling downloadLengthFromUCSC(hg19, exoniphy) on the date on which the package was last updated.
data(hg19.exoniphy.LENGTH) head(hg19.exoniphy.LENGTH)data(hg19.exoniphy.LENGTH) head(hg19.exoniphy.LENGTH)
hg19.geneSymbol.LENGTH is an R object which maps transcripts to the length (in bp) of their mature mRNA transcripts. Where available, it will also provide the mapping between a gene ID and its associated transcripts. The data is obtained from the UCSC table browser (http://genome.ucsc.edu/cgi-bin/hgTables) using the geneSymbol table.
The data file was made by calling downloadLengthFromUCSC(hg19, geneSymbol) on the date on which the package was last updated.
data(hg19.geneSymbol.LENGTH) head(hg19.geneSymbol.LENGTH)data(hg19.geneSymbol.LENGTH) head(hg19.geneSymbol.LENGTH)
hg19.knownGene.LENGTH is an R object which maps transcripts to the length (in bp) of their mature mRNA transcripts. Where available, it will also provide the mapping between a gene ID and its associated transcripts. The data is obtained from the UCSC table browser (http://genome.ucsc.edu/cgi-bin/hgTables) using the knownGene table.
The data file was made by calling downloadLengthFromUCSC(hg19, knownGene) on the date on which the package was last updated.
data(hg19.knownGene.LENGTH) head(hg19.knownGene.LENGTH)data(hg19.knownGene.LENGTH) head(hg19.knownGene.LENGTH)
hg19.nscanGene.LENGTH is an R object which maps transcripts to the length (in bp) of their mature mRNA transcripts. Where available, it will also provide the mapping between a gene ID and its associated transcripts. The data is obtained from the UCSC table browser (http://genome.ucsc.edu/cgi-bin/hgTables) using the nscanGene table.
The data file was made by calling downloadLengthFromUCSC(hg19, nscanGene) on the date on which the package was last updated.
data(hg19.nscanGene.LENGTH) head(hg19.nscanGene.LENGTH)data(hg19.nscanGene.LENGTH) head(hg19.nscanGene.LENGTH)
hg19.refGene.LENGTH is an R object which maps transcripts to the length (in bp) of their mature mRNA transcripts. Where available, it will also provide the mapping between a gene ID and its associated transcripts. The data is obtained from the UCSC table browser (http://genome.ucsc.edu/cgi-bin/hgTables) using the refGene table.
The data file was made by calling downloadLengthFromUCSC(hg19, refGene) on the date on which the package was last updated.
data(hg19.refGene.LENGTH) head(hg19.refGene.LENGTH)data(hg19.refGene.LENGTH) head(hg19.refGene.LENGTH)
hg19.xenoRefGene.LENGTH is an R object which maps transcripts to the length (in bp) of their mature mRNA transcripts. Where available, it will also provide the mapping between a gene ID and its associated transcripts. The data is obtained from the UCSC table browser (http://genome.ucsc.edu/cgi-bin/hgTables) using the xenoRefGene table.
The data file was made by calling downloadLengthFromUCSC(hg19, xenoRefGene) on the date on which the package was last updated.
data(hg19.xenoRefGene.LENGTH) head(hg19.xenoRefGene.LENGTH)data(hg19.xenoRefGene.LENGTH) head(hg19.xenoRefGene.LENGTH)
loxAfr3.xenoRefGene.LENGTH is an R object which maps transcripts to the length (in bp) of their mature mRNA transcripts. Where available, it will also provide the mapping between a gene ID and its associated transcripts. The data is obtained from the UCSC table browser (http://genome.ucsc.edu/cgi-bin/hgTables) using the xenoRefGene table.
The data file was made by calling downloadLengthFromUCSC(loxAfr3, xenoRefGene) on the date on which the package was last updated.
data(loxAfr3.xenoRefGene.LENGTH) head(loxAfr3.xenoRefGene.LENGTH)data(loxAfr3.xenoRefGene.LENGTH) head(loxAfr3.xenoRefGene.LENGTH)
mm7.ensGene.LENGTH is an R object which maps transcripts to the length (in bp) of their mature mRNA transcripts. Where available, it will also provide the mapping between a gene ID and its associated transcripts. The data is obtained from the UCSC table browser (http://genome.ucsc.edu/cgi-bin/hgTables) using the ensGene table.
The data file was made by calling downloadLengthFromUCSC(mm7, ensGene) on the date on which the package was last updated.
data(mm7.ensGene.LENGTH) head(mm7.ensGene.LENGTH)data(mm7.ensGene.LENGTH) head(mm7.ensGene.LENGTH)
mm7.geneid.LENGTH is an R object which maps transcripts to the length (in bp) of their mature mRNA transcripts. Where available, it will also provide the mapping between a gene ID and its associated transcripts. The data is obtained from the UCSC table browser (http://genome.ucsc.edu/cgi-bin/hgTables) using the geneid table.
The data file was made by calling downloadLengthFromUCSC(mm7, geneid) on the date on which the package was last updated.
data(mm7.geneid.LENGTH) head(mm7.geneid.LENGTH)data(mm7.geneid.LENGTH) head(mm7.geneid.LENGTH)
mm7.geneSymbol.LENGTH is an R object which maps transcripts to the length (in bp) of their mature mRNA transcripts. Where available, it will also provide the mapping between a gene ID and its associated transcripts. The data is obtained from the UCSC table browser (http://genome.ucsc.edu/cgi-bin/hgTables) using the geneSymbol table.
The data file was made by calling downloadLengthFromUCSC(mm7, geneSymbol) on the date on which the package was last updated.
data(mm7.geneSymbol.LENGTH) head(mm7.geneSymbol.LENGTH)data(mm7.geneSymbol.LENGTH) head(mm7.geneSymbol.LENGTH)
mm7.genscan.LENGTH is an R object which maps transcripts to the length (in bp) of their mature mRNA transcripts. Where available, it will also provide the mapping between a gene ID and its associated transcripts. The data is obtained from the UCSC table browser (http://genome.ucsc.edu/cgi-bin/hgTables) using the genscan table.
The data file was made by calling downloadLengthFromUCSC(mm7, genscan) on the date on which the package was last updated.
data(mm7.genscan.LENGTH) head(mm7.genscan.LENGTH)data(mm7.genscan.LENGTH) head(mm7.genscan.LENGTH)
mm7.knownGene.LENGTH is an R object which maps transcripts to the length (in bp) of their mature mRNA transcripts. Where available, it will also provide the mapping between a gene ID and its associated transcripts. The data is obtained from the UCSC table browser (http://genome.ucsc.edu/cgi-bin/hgTables) using the knownGene table.
The data file was made by calling downloadLengthFromUCSC(mm7, knownGene) on the date on which the package was last updated.
data(mm7.knownGene.LENGTH) head(mm7.knownGene.LENGTH)data(mm7.knownGene.LENGTH) head(mm7.knownGene.LENGTH)
mm7.refGene.LENGTH is an R object which maps transcripts to the length (in bp) of their mature mRNA transcripts. Where available, it will also provide the mapping between a gene ID and its associated transcripts. The data is obtained from the UCSC table browser (http://genome.ucsc.edu/cgi-bin/hgTables) using the refGene table.
The data file was made by calling downloadLengthFromUCSC(mm7, refGene) on the date on which the package was last updated.
data(mm7.refGene.LENGTH) head(mm7.refGene.LENGTH)data(mm7.refGene.LENGTH) head(mm7.refGene.LENGTH)
mm7.sgpGene.LENGTH is an R object which maps transcripts to the length (in bp) of their mature mRNA transcripts. Where available, it will also provide the mapping between a gene ID and its associated transcripts. The data is obtained from the UCSC table browser (http://genome.ucsc.edu/cgi-bin/hgTables) using the sgpGene table.
The data file was made by calling downloadLengthFromUCSC(mm7, sgpGene) on the date on which the package was last updated.
data(mm7.sgpGene.LENGTH) head(mm7.sgpGene.LENGTH)data(mm7.sgpGene.LENGTH) head(mm7.sgpGene.LENGTH)
mm7.xenoRefGene.LENGTH is an R object which maps transcripts to the length (in bp) of their mature mRNA transcripts. Where available, it will also provide the mapping between a gene ID and its associated transcripts. The data is obtained from the UCSC table browser (http://genome.ucsc.edu/cgi-bin/hgTables) using the xenoRefGene table.
The data file was made by calling downloadLengthFromUCSC(mm7, xenoRefGene) on the date on which the package was last updated.
data(mm7.xenoRefGene.LENGTH) head(mm7.xenoRefGene.LENGTH)data(mm7.xenoRefGene.LENGTH) head(mm7.xenoRefGene.LENGTH)
mm8.ccdsGene.LENGTH is an R object which maps transcripts to the length (in bp) of their mature mRNA transcripts. Where available, it will also provide the mapping between a gene ID and its associated transcripts. The data is obtained from the UCSC table browser (http://genome.ucsc.edu/cgi-bin/hgTables) using the ccdsGene table.
The data file was made by calling downloadLengthFromUCSC(mm8, ccdsGene) on the date on which the package was last updated.
data(mm8.ccdsGene.LENGTH) head(mm8.ccdsGene.LENGTH)data(mm8.ccdsGene.LENGTH) head(mm8.ccdsGene.LENGTH)
mm8.ensGene.LENGTH is an R object which maps transcripts to the length (in bp) of their mature mRNA transcripts. Where available, it will also provide the mapping between a gene ID and its associated transcripts. The data is obtained from the UCSC table browser (http://genome.ucsc.edu/cgi-bin/hgTables) using the ensGene table.
The data file was made by calling downloadLengthFromUCSC(mm8, ensGene) on the date on which the package was last updated.
data(mm8.ensGene.LENGTH) head(mm8.ensGene.LENGTH)data(mm8.ensGene.LENGTH) head(mm8.ensGene.LENGTH)
mm8.geneid.LENGTH is an R object which maps transcripts to the length (in bp) of their mature mRNA transcripts. Where available, it will also provide the mapping between a gene ID and its associated transcripts. The data is obtained from the UCSC table browser (http://genome.ucsc.edu/cgi-bin/hgTables) using the geneid table.
The data file was made by calling downloadLengthFromUCSC(mm8, geneid) on the date on which the package was last updated.
data(mm8.geneid.LENGTH) head(mm8.geneid.LENGTH)data(mm8.geneid.LENGTH) head(mm8.geneid.LENGTH)
mm8.geneSymbol.LENGTH is an R object which maps transcripts to the length (in bp) of their mature mRNA transcripts. Where available, it will also provide the mapping between a gene ID and its associated transcripts. The data is obtained from the UCSC table browser (http://genome.ucsc.edu/cgi-bin/hgTables) using the geneSymbol table.
The data file was made by calling downloadLengthFromUCSC(mm8, geneSymbol) on the date on which the package was last updated.
data(mm8.geneSymbol.LENGTH) head(mm8.geneSymbol.LENGTH)data(mm8.geneSymbol.LENGTH) head(mm8.geneSymbol.LENGTH)
mm8.genscan.LENGTH is an R object which maps transcripts to the length (in bp) of their mature mRNA transcripts. Where available, it will also provide the mapping between a gene ID and its associated transcripts. The data is obtained from the UCSC table browser (http://genome.ucsc.edu/cgi-bin/hgTables) using the genscan table.
The data file was made by calling downloadLengthFromUCSC(mm8, genscan) on the date on which the package was last updated.
data(mm8.genscan.LENGTH) head(mm8.genscan.LENGTH)data(mm8.genscan.LENGTH) head(mm8.genscan.LENGTH)
mm8.knownGene.LENGTH is an R object which maps transcripts to the length (in bp) of their mature mRNA transcripts. Where available, it will also provide the mapping between a gene ID and its associated transcripts. The data is obtained from the UCSC table browser (http://genome.ucsc.edu/cgi-bin/hgTables) using the knownGene table.
The data file was made by calling downloadLengthFromUCSC(mm8, knownGene) on the date on which the package was last updated.
data(mm8.knownGene.LENGTH) head(mm8.knownGene.LENGTH)data(mm8.knownGene.LENGTH) head(mm8.knownGene.LENGTH)
mm8.nscanGene.LENGTH is an R object which maps transcripts to the length (in bp) of their mature mRNA transcripts. Where available, it will also provide the mapping between a gene ID and its associated transcripts. The data is obtained from the UCSC table browser (http://genome.ucsc.edu/cgi-bin/hgTables) using the nscanGene table.
The data file was made by calling downloadLengthFromUCSC(mm8, nscanGene) on the date on which the package was last updated.
data(mm8.nscanGene.LENGTH) head(mm8.nscanGene.LENGTH)data(mm8.nscanGene.LENGTH) head(mm8.nscanGene.LENGTH)
mm8.refGene.LENGTH is an R object which maps transcripts to the length (in bp) of their mature mRNA transcripts. Where available, it will also provide the mapping between a gene ID and its associated transcripts. The data is obtained from the UCSC table browser (http://genome.ucsc.edu/cgi-bin/hgTables) using the refGene table.
The data file was made by calling downloadLengthFromUCSC(mm8, refGene) on the date on which the package was last updated.
data(mm8.refGene.LENGTH) head(mm8.refGene.LENGTH)data(mm8.refGene.LENGTH) head(mm8.refGene.LENGTH)
mm8.sgpGene.LENGTH is an R object which maps transcripts to the length (in bp) of their mature mRNA transcripts. Where available, it will also provide the mapping between a gene ID and its associated transcripts. The data is obtained from the UCSC table browser (http://genome.ucsc.edu/cgi-bin/hgTables) using the sgpGene table.
The data file was made by calling downloadLengthFromUCSC(mm8, sgpGene) on the date on which the package was last updated.
data(mm8.sgpGene.LENGTH) head(mm8.sgpGene.LENGTH)data(mm8.sgpGene.LENGTH) head(mm8.sgpGene.LENGTH)
mm8.sibGene.LENGTH is an R object which maps transcripts to the length (in bp) of their mature mRNA transcripts. Where available, it will also provide the mapping between a gene ID and its associated transcripts. The data is obtained from the UCSC table browser (http://genome.ucsc.edu/cgi-bin/hgTables) using the sibGene table.
The data file was made by calling downloadLengthFromUCSC(mm8, sibGene) on the date on which the package was last updated.
data(mm8.sibGene.LENGTH) head(mm8.sibGene.LENGTH)data(mm8.sibGene.LENGTH) head(mm8.sibGene.LENGTH)
mm8.xenoRefGene.LENGTH is an R object which maps transcripts to the length (in bp) of their mature mRNA transcripts. Where available, it will also provide the mapping between a gene ID and its associated transcripts. The data is obtained from the UCSC table browser (http://genome.ucsc.edu/cgi-bin/hgTables) using the xenoRefGene table.
The data file was made by calling downloadLengthFromUCSC(mm8, xenoRefGene) on the date on which the package was last updated.
data(mm8.xenoRefGene.LENGTH) head(mm8.xenoRefGene.LENGTH)data(mm8.xenoRefGene.LENGTH) head(mm8.xenoRefGene.LENGTH)
mm9.acembly.LENGTH is an R object which maps transcripts to the length (in bp) of their mature mRNA transcripts. Where available, it will also provide the mapping between a gene ID and its associated transcripts. The data is obtained from the UCSC table browser (http://genome.ucsc.edu/cgi-bin/hgTables) using the acembly table.
The data file was made by calling downloadLengthFromUCSC(mm9, acembly) on the date on which the package was last updated.
data(mm9.acembly.LENGTH) head(mm9.acembly.LENGTH)data(mm9.acembly.LENGTH) head(mm9.acembly.LENGTH)
mm9.ccdsGene.LENGTH is an R object which maps transcripts to the length (in bp) of their mature mRNA transcripts. Where available, it will also provide the mapping between a gene ID and its associated transcripts. The data is obtained from the UCSC table browser (http://genome.ucsc.edu/cgi-bin/hgTables) using the ccdsGene table.
The data file was made by calling downloadLengthFromUCSC(mm9, ccdsGene) on the date on which the package was last updated.
data(mm9.ccdsGene.LENGTH) head(mm9.ccdsGene.LENGTH)data(mm9.ccdsGene.LENGTH) head(mm9.ccdsGene.LENGTH)
mm9.ensGene.LENGTH is an R object which maps transcripts to the length (in bp) of their mature mRNA transcripts. Where available, it will also provide the mapping between a gene ID and its associated transcripts. The data is obtained from the UCSC table browser (http://genome.ucsc.edu/cgi-bin/hgTables) using the ensGene table.
The data file was made by calling downloadLengthFromUCSC(mm9, ensGene) on the date on which the package was last updated.
data(mm9.ensGene.LENGTH) head(mm9.ensGene.LENGTH)data(mm9.ensGene.LENGTH) head(mm9.ensGene.LENGTH)
mm9.exoniphy.LENGTH is an R object which maps transcripts to the length (in bp) of their mature mRNA transcripts. Where available, it will also provide the mapping between a gene ID and its associated transcripts. The data is obtained from the UCSC table browser (http://genome.ucsc.edu/cgi-bin/hgTables) using the exoniphy table.
The data file was made by calling downloadLengthFromUCSC(mm9, exoniphy) on the date on which the package was last updated.
data(mm9.exoniphy.LENGTH) head(mm9.exoniphy.LENGTH)data(mm9.exoniphy.LENGTH) head(mm9.exoniphy.LENGTH)
mm9.geneid.LENGTH is an R object which maps transcripts to the length (in bp) of their mature mRNA transcripts. Where available, it will also provide the mapping between a gene ID and its associated transcripts. The data is obtained from the UCSC table browser (http://genome.ucsc.edu/cgi-bin/hgTables) using the geneid table.
The data file was made by calling downloadLengthFromUCSC(mm9, geneid) on the date on which the package was last updated.
data(mm9.geneid.LENGTH) head(mm9.geneid.LENGTH)data(mm9.geneid.LENGTH) head(mm9.geneid.LENGTH)
mm9.geneSymbol.LENGTH is an R object which maps transcripts to the length (in bp) of their mature mRNA transcripts. Where available, it will also provide the mapping between a gene ID and its associated transcripts. The data is obtained from the UCSC table browser (http://genome.ucsc.edu/cgi-bin/hgTables) using the geneSymbol table.
The data file was made by calling downloadLengthFromUCSC(mm9, geneSymbol) on the date on which the package was last updated.
data(mm9.geneSymbol.LENGTH) head(mm9.geneSymbol.LENGTH)data(mm9.geneSymbol.LENGTH) head(mm9.geneSymbol.LENGTH)
mm9.genscan.LENGTH is an R object which maps transcripts to the length (in bp) of their mature mRNA transcripts. Where available, it will also provide the mapping between a gene ID and its associated transcripts. The data is obtained from the UCSC table browser (http://genome.ucsc.edu/cgi-bin/hgTables) using the genscan table.
The data file was made by calling downloadLengthFromUCSC(mm9, genscan) on the date on which the package was last updated.
data(mm9.genscan.LENGTH) head(mm9.genscan.LENGTH)data(mm9.genscan.LENGTH) head(mm9.genscan.LENGTH)
mm9.knownGene.LENGTH is an R object which maps transcripts to the length (in bp) of their mature mRNA transcripts. Where available, it will also provide the mapping between a gene ID and its associated transcripts. The data is obtained from the UCSC table browser (http://genome.ucsc.edu/cgi-bin/hgTables) using the knownGene table.
The data file was made by calling downloadLengthFromUCSC(mm9, knownGene) on the date on which the package was last updated.
data(mm9.knownGene.LENGTH) head(mm9.knownGene.LENGTH)data(mm9.knownGene.LENGTH) head(mm9.knownGene.LENGTH)
mm9.nscanGene.LENGTH is an R object which maps transcripts to the length (in bp) of their mature mRNA transcripts. Where available, it will also provide the mapping between a gene ID and its associated transcripts. The data is obtained from the UCSC table browser (http://genome.ucsc.edu/cgi-bin/hgTables) using the nscanGene table.
The data file was made by calling downloadLengthFromUCSC(mm9, nscanGene) on the date on which the package was last updated.
data(mm9.nscanGene.LENGTH) head(mm9.nscanGene.LENGTH)data(mm9.nscanGene.LENGTH) head(mm9.nscanGene.LENGTH)
mm9.refGene.LENGTH is an R object which maps transcripts to the length (in bp) of their mature mRNA transcripts. Where available, it will also provide the mapping between a gene ID and its associated transcripts. The data is obtained from the UCSC table browser (http://genome.ucsc.edu/cgi-bin/hgTables) using the refGene table.
The data file was made by calling downloadLengthFromUCSC(mm9, refGene) on the date on which the package was last updated.
data(mm9.refGene.LENGTH) head(mm9.refGene.LENGTH)data(mm9.refGene.LENGTH) head(mm9.refGene.LENGTH)
mm9.sgpGene.LENGTH is an R object which maps transcripts to the length (in bp) of their mature mRNA transcripts. Where available, it will also provide the mapping between a gene ID and its associated transcripts. The data is obtained from the UCSC table browser (http://genome.ucsc.edu/cgi-bin/hgTables) using the sgpGene table.
The data file was made by calling downloadLengthFromUCSC(mm9, sgpGene) on the date on which the package was last updated.
data(mm9.sgpGene.LENGTH) head(mm9.sgpGene.LENGTH)data(mm9.sgpGene.LENGTH) head(mm9.sgpGene.LENGTH)
mm9.xenoRefGene.LENGTH is an R object which maps transcripts to the length (in bp) of their mature mRNA transcripts. Where available, it will also provide the mapping between a gene ID and its associated transcripts. The data is obtained from the UCSC table browser (http://genome.ucsc.edu/cgi-bin/hgTables) using the xenoRefGene table.
The data file was made by calling downloadLengthFromUCSC(mm9, xenoRefGene) on the date on which the package was last updated.
data(mm9.xenoRefGene.LENGTH) head(mm9.xenoRefGene.LENGTH)data(mm9.xenoRefGene.LENGTH) head(mm9.xenoRefGene.LENGTH)
monDom1.genscan.LENGTH is an R object which maps transcripts to the length (in bp) of their mature mRNA transcripts. Where available, it will also provide the mapping between a gene ID and its associated transcripts. The data is obtained from the UCSC table browser (http://genome.ucsc.edu/cgi-bin/hgTables) using the genscan table.
The data file was made by calling downloadLengthFromUCSC(monDom1, genscan) on the date on which the package was last updated.
data(monDom1.genscan.LENGTH) head(monDom1.genscan.LENGTH)data(monDom1.genscan.LENGTH) head(monDom1.genscan.LENGTH)
monDom4.ensGene.LENGTH is an R object which maps transcripts to the length (in bp) of their mature mRNA transcripts. Where available, it will also provide the mapping between a gene ID and its associated transcripts. The data is obtained from the UCSC table browser (http://genome.ucsc.edu/cgi-bin/hgTables) using the ensGene table.
The data file was made by calling downloadLengthFromUCSC(monDom4, ensGene) on the date on which the package was last updated.
data(monDom4.ensGene.LENGTH) head(monDom4.ensGene.LENGTH)data(monDom4.ensGene.LENGTH) head(monDom4.ensGene.LENGTH)
monDom4.geneSymbol.LENGTH is an R object which maps transcripts to the length (in bp) of their mature mRNA transcripts. Where available, it will also provide the mapping between a gene ID and its associated transcripts. The data is obtained from the UCSC table browser (http://genome.ucsc.edu/cgi-bin/hgTables) using the geneSymbol table.
The data file was made by calling downloadLengthFromUCSC(monDom4, geneSymbol) on the date on which the package was last updated.
data(monDom4.geneSymbol.LENGTH) head(monDom4.geneSymbol.LENGTH)data(monDom4.geneSymbol.LENGTH) head(monDom4.geneSymbol.LENGTH)
monDom4.genscan.LENGTH is an R object which maps transcripts to the length (in bp) of their mature mRNA transcripts. Where available, it will also provide the mapping between a gene ID and its associated transcripts. The data is obtained from the UCSC table browser (http://genome.ucsc.edu/cgi-bin/hgTables) using the genscan table.
The data file was made by calling downloadLengthFromUCSC(monDom4, genscan) on the date on which the package was last updated.
data(monDom4.genscan.LENGTH) head(monDom4.genscan.LENGTH)data(monDom4.genscan.LENGTH) head(monDom4.genscan.LENGTH)
monDom4.nscanGene.LENGTH is an R object which maps transcripts to the length (in bp) of their mature mRNA transcripts. Where available, it will also provide the mapping between a gene ID and its associated transcripts. The data is obtained from the UCSC table browser (http://genome.ucsc.edu/cgi-bin/hgTables) using the nscanGene table.
The data file was made by calling downloadLengthFromUCSC(monDom4, nscanGene) on the date on which the package was last updated.
data(monDom4.nscanGene.LENGTH) head(monDom4.nscanGene.LENGTH)data(monDom4.nscanGene.LENGTH) head(monDom4.nscanGene.LENGTH)
monDom4.refGene.LENGTH is an R object which maps transcripts to the length (in bp) of their mature mRNA transcripts. Where available, it will also provide the mapping between a gene ID and its associated transcripts. The data is obtained from the UCSC table browser (http://genome.ucsc.edu/cgi-bin/hgTables) using the refGene table.
The data file was made by calling downloadLengthFromUCSC(monDom4, refGene) on the date on which the package was last updated.
data(monDom4.refGene.LENGTH) head(monDom4.refGene.LENGTH)data(monDom4.refGene.LENGTH) head(monDom4.refGene.LENGTH)
monDom4.xenoRefGene.LENGTH is an R object which maps transcripts to the length (in bp) of their mature mRNA transcripts. Where available, it will also provide the mapping between a gene ID and its associated transcripts. The data is obtained from the UCSC table browser (http://genome.ucsc.edu/cgi-bin/hgTables) using the xenoRefGene table.
The data file was made by calling downloadLengthFromUCSC(monDom4, xenoRefGene) on the date on which the package was last updated.
data(monDom4.xenoRefGene.LENGTH) head(monDom4.xenoRefGene.LENGTH)data(monDom4.xenoRefGene.LENGTH) head(monDom4.xenoRefGene.LENGTH)
monDom5.ensGene.LENGTH is an R object which maps transcripts to the length (in bp) of their mature mRNA transcripts. Where available, it will also provide the mapping between a gene ID and its associated transcripts. The data is obtained from the UCSC table browser (http://genome.ucsc.edu/cgi-bin/hgTables) using the ensGene table.
The data file was made by calling downloadLengthFromUCSC(monDom5, ensGene) on the date on which the package was last updated.
data(monDom5.ensGene.LENGTH) head(monDom5.ensGene.LENGTH)data(monDom5.ensGene.LENGTH) head(monDom5.ensGene.LENGTH)
monDom5.geneSymbol.LENGTH is an R object which maps transcripts to the length (in bp) of their mature mRNA transcripts. Where available, it will also provide the mapping between a gene ID and its associated transcripts. The data is obtained from the UCSC table browser (http://genome.ucsc.edu/cgi-bin/hgTables) using the geneSymbol table.
The data file was made by calling downloadLengthFromUCSC(monDom5, geneSymbol) on the date on which the package was last updated.
data(monDom5.geneSymbol.LENGTH) head(monDom5.geneSymbol.LENGTH)data(monDom5.geneSymbol.LENGTH) head(monDom5.geneSymbol.LENGTH)
monDom5.genscan.LENGTH is an R object which maps transcripts to the length (in bp) of their mature mRNA transcripts. Where available, it will also provide the mapping between a gene ID and its associated transcripts. The data is obtained from the UCSC table browser (http://genome.ucsc.edu/cgi-bin/hgTables) using the genscan table.
The data file was made by calling downloadLengthFromUCSC(monDom5, genscan) on the date on which the package was last updated.
data(monDom5.genscan.LENGTH) head(monDom5.genscan.LENGTH)data(monDom5.genscan.LENGTH) head(monDom5.genscan.LENGTH)
monDom5.nscanGene.LENGTH is an R object which maps transcripts to the length (in bp) of their mature mRNA transcripts. Where available, it will also provide the mapping between a gene ID and its associated transcripts. The data is obtained from the UCSC table browser (http://genome.ucsc.edu/cgi-bin/hgTables) using the nscanGene table.
The data file was made by calling downloadLengthFromUCSC(monDom5, nscanGene) on the date on which the package was last updated.
data(monDom5.nscanGene.LENGTH) head(monDom5.nscanGene.LENGTH)data(monDom5.nscanGene.LENGTH) head(monDom5.nscanGene.LENGTH)
monDom5.refGene.LENGTH is an R object which maps transcripts to the length (in bp) of their mature mRNA transcripts. Where available, it will also provide the mapping between a gene ID and its associated transcripts. The data is obtained from the UCSC table browser (http://genome.ucsc.edu/cgi-bin/hgTables) using the refGene table.
The data file was made by calling downloadLengthFromUCSC(monDom5, refGene) on the date on which the package was last updated.
data(monDom5.refGene.LENGTH) head(monDom5.refGene.LENGTH)data(monDom5.refGene.LENGTH) head(monDom5.refGene.LENGTH)
monDom5.xenoRefGene.LENGTH is an R object which maps transcripts to the length (in bp) of their mature mRNA transcripts. Where available, it will also provide the mapping between a gene ID and its associated transcripts. The data is obtained from the UCSC table browser (http://genome.ucsc.edu/cgi-bin/hgTables) using the xenoRefGene table.
The data file was made by calling downloadLengthFromUCSC(monDom5, xenoRefGene) on the date on which the package was last updated.
data(monDom5.xenoRefGene.LENGTH) head(monDom5.xenoRefGene.LENGTH)data(monDom5.xenoRefGene.LENGTH) head(monDom5.xenoRefGene.LENGTH)
ornAna1.ensGene.LENGTH is an R object which maps transcripts to the length (in bp) of their mature mRNA transcripts. Where available, it will also provide the mapping between a gene ID and its associated transcripts. The data is obtained from the UCSC table browser (http://genome.ucsc.edu/cgi-bin/hgTables) using the ensGene table.
The data file was made by calling downloadLengthFromUCSC(ornAna1, ensGene) on the date on which the package was last updated.
data(ornAna1.ensGene.LENGTH) head(ornAna1.ensGene.LENGTH)data(ornAna1.ensGene.LENGTH) head(ornAna1.ensGene.LENGTH)
ornAna1.geneSymbol.LENGTH is an R object which maps transcripts to the length (in bp) of their mature mRNA transcripts. Where available, it will also provide the mapping between a gene ID and its associated transcripts. The data is obtained from the UCSC table browser (http://genome.ucsc.edu/cgi-bin/hgTables) using the geneSymbol table.
The data file was made by calling downloadLengthFromUCSC(ornAna1, geneSymbol) on the date on which the package was last updated.
data(ornAna1.geneSymbol.LENGTH) head(ornAna1.geneSymbol.LENGTH)data(ornAna1.geneSymbol.LENGTH) head(ornAna1.geneSymbol.LENGTH)
ornAna1.refGene.LENGTH is an R object which maps transcripts to the length (in bp) of their mature mRNA transcripts. Where available, it will also provide the mapping between a gene ID and its associated transcripts. The data is obtained from the UCSC table browser (http://genome.ucsc.edu/cgi-bin/hgTables) using the refGene table.
The data file was made by calling downloadLengthFromUCSC(ornAna1, refGene) on the date on which the package was last updated.
data(ornAna1.refGene.LENGTH) head(ornAna1.refGene.LENGTH)data(ornAna1.refGene.LENGTH) head(ornAna1.refGene.LENGTH)
ornAna1.xenoRefGene.LENGTH is an R object which maps transcripts to the length (in bp) of their mature mRNA transcripts. Where available, it will also provide the mapping between a gene ID and its associated transcripts. The data is obtained from the UCSC table browser (http://genome.ucsc.edu/cgi-bin/hgTables) using the xenoRefGene table.
The data file was made by calling downloadLengthFromUCSC(ornAna1, xenoRefGene) on the date on which the package was last updated.
data(ornAna1.xenoRefGene.LENGTH) head(ornAna1.xenoRefGene.LENGTH)data(ornAna1.xenoRefGene.LENGTH) head(ornAna1.xenoRefGene.LENGTH)
oryLat2.ensGene.LENGTH is an R object which maps transcripts to the length (in bp) of their mature mRNA transcripts. Where available, it will also provide the mapping between a gene ID and its associated transcripts. The data is obtained from the UCSC table browser (http://genome.ucsc.edu/cgi-bin/hgTables) using the ensGene table.
The data file was made by calling downloadLengthFromUCSC(oryLat2, ensGene) on the date on which the package was last updated.
data(oryLat2.ensGene.LENGTH) head(oryLat2.ensGene.LENGTH)data(oryLat2.ensGene.LENGTH) head(oryLat2.ensGene.LENGTH)
oryLat2.geneSymbol.LENGTH is an R object which maps transcripts to the length (in bp) of their mature mRNA transcripts. Where available, it will also provide the mapping between a gene ID and its associated transcripts. The data is obtained from the UCSC table browser (http://genome.ucsc.edu/cgi-bin/hgTables) using the geneSymbol table.
The data file was made by calling downloadLengthFromUCSC(oryLat2, geneSymbol) on the date on which the package was last updated.
data(oryLat2.geneSymbol.LENGTH) head(oryLat2.geneSymbol.LENGTH)data(oryLat2.geneSymbol.LENGTH) head(oryLat2.geneSymbol.LENGTH)
oryLat2.refGene.LENGTH is an R object which maps transcripts to the length (in bp) of their mature mRNA transcripts. Where available, it will also provide the mapping between a gene ID and its associated transcripts. The data is obtained from the UCSC table browser (http://genome.ucsc.edu/cgi-bin/hgTables) using the refGene table.
The data file was made by calling downloadLengthFromUCSC(oryLat2, refGene) on the date on which the package was last updated.
data(oryLat2.refGene.LENGTH) head(oryLat2.refGene.LENGTH)data(oryLat2.refGene.LENGTH) head(oryLat2.refGene.LENGTH)
oryLat2.xenoRefGene.LENGTH is an R object which maps transcripts to the length (in bp) of their mature mRNA transcripts. Where available, it will also provide the mapping between a gene ID and its associated transcripts. The data is obtained from the UCSC table browser (http://genome.ucsc.edu/cgi-bin/hgTables) using the xenoRefGene table.
The data file was made by calling downloadLengthFromUCSC(oryLat2, xenoRefGene) on the date on which the package was last updated.
data(oryLat2.xenoRefGene.LENGTH) head(oryLat2.xenoRefGene.LENGTH)data(oryLat2.xenoRefGene.LENGTH) head(oryLat2.xenoRefGene.LENGTH)
panTro1.ensGene.LENGTH is an R object which maps transcripts to the length (in bp) of their mature mRNA transcripts. Where available, it will also provide the mapping between a gene ID and its associated transcripts. The data is obtained from the UCSC table browser (http://genome.ucsc.edu/cgi-bin/hgTables) using the ensGene table.
The data file was made by calling downloadLengthFromUCSC(panTro1, ensGene) on the date on which the package was last updated.
data(panTro1.ensGene.LENGTH) head(panTro1.ensGene.LENGTH)data(panTro1.ensGene.LENGTH) head(panTro1.ensGene.LENGTH)
panTro1.geneid.LENGTH is an R object which maps transcripts to the length (in bp) of their mature mRNA transcripts. Where available, it will also provide the mapping between a gene ID and its associated transcripts. The data is obtained from the UCSC table browser (http://genome.ucsc.edu/cgi-bin/hgTables) using the geneid table.
The data file was made by calling downloadLengthFromUCSC(panTro1, geneid) on the date on which the package was last updated.
data(panTro1.geneid.LENGTH) head(panTro1.geneid.LENGTH)data(panTro1.geneid.LENGTH) head(panTro1.geneid.LENGTH)
panTro1.genscan.LENGTH is an R object which maps transcripts to the length (in bp) of their mature mRNA transcripts. Where available, it will also provide the mapping between a gene ID and its associated transcripts. The data is obtained from the UCSC table browser (http://genome.ucsc.edu/cgi-bin/hgTables) using the genscan table.
The data file was made by calling downloadLengthFromUCSC(panTro1, genscan) on the date on which the package was last updated.
data(panTro1.genscan.LENGTH) head(panTro1.genscan.LENGTH)data(panTro1.genscan.LENGTH) head(panTro1.genscan.LENGTH)
panTro1.xenoRefGene.LENGTH is an R object which maps transcripts to the length (in bp) of their mature mRNA transcripts. Where available, it will also provide the mapping between a gene ID and its associated transcripts. The data is obtained from the UCSC table browser (http://genome.ucsc.edu/cgi-bin/hgTables) using the xenoRefGene table.
The data file was made by calling downloadLengthFromUCSC(panTro1, xenoRefGene) on the date on which the package was last updated.
data(panTro1.xenoRefGene.LENGTH) head(panTro1.xenoRefGene.LENGTH)data(panTro1.xenoRefGene.LENGTH) head(panTro1.xenoRefGene.LENGTH)
panTro2.ensGene.LENGTH is an R object which maps transcripts to the length (in bp) of their mature mRNA transcripts. Where available, it will also provide the mapping between a gene ID and its associated transcripts. The data is obtained from the UCSC table browser (http://genome.ucsc.edu/cgi-bin/hgTables) using the ensGene table.
The data file was made by calling downloadLengthFromUCSC(panTro2, ensGene) on the date on which the package was last updated.
data(panTro2.ensGene.LENGTH) head(panTro2.ensGene.LENGTH)data(panTro2.ensGene.LENGTH) head(panTro2.ensGene.LENGTH)
panTro2.geneSymbol.LENGTH is an R object which maps transcripts to the length (in bp) of their mature mRNA transcripts. Where available, it will also provide the mapping between a gene ID and its associated transcripts. The data is obtained from the UCSC table browser (http://genome.ucsc.edu/cgi-bin/hgTables) using the geneSymbol table.
The data file was made by calling downloadLengthFromUCSC(panTro2, geneSymbol) on the date on which the package was last updated.
data(panTro2.geneSymbol.LENGTH) head(panTro2.geneSymbol.LENGTH)data(panTro2.geneSymbol.LENGTH) head(panTro2.geneSymbol.LENGTH)
panTro2.genscan.LENGTH is an R object which maps transcripts to the length (in bp) of their mature mRNA transcripts. Where available, it will also provide the mapping between a gene ID and its associated transcripts. The data is obtained from the UCSC table browser (http://genome.ucsc.edu/cgi-bin/hgTables) using the genscan table.
The data file was made by calling downloadLengthFromUCSC(panTro2, genscan) on the date on which the package was last updated.
data(panTro2.genscan.LENGTH) head(panTro2.genscan.LENGTH)data(panTro2.genscan.LENGTH) head(panTro2.genscan.LENGTH)
panTro2.nscanGene.LENGTH is an R object which maps transcripts to the length (in bp) of their mature mRNA transcripts. Where available, it will also provide the mapping between a gene ID and its associated transcripts. The data is obtained from the UCSC table browser (http://genome.ucsc.edu/cgi-bin/hgTables) using the nscanGene table.
The data file was made by calling downloadLengthFromUCSC(panTro2, nscanGene) on the date on which the package was last updated.
data(panTro2.nscanGene.LENGTH) head(panTro2.nscanGene.LENGTH)data(panTro2.nscanGene.LENGTH) head(panTro2.nscanGene.LENGTH)
panTro2.refGene.LENGTH is an R object which maps transcripts to the length (in bp) of their mature mRNA transcripts. Where available, it will also provide the mapping between a gene ID and its associated transcripts. The data is obtained from the UCSC table browser (http://genome.ucsc.edu/cgi-bin/hgTables) using the refGene table.
The data file was made by calling downloadLengthFromUCSC(panTro2, refGene) on the date on which the package was last updated.
data(panTro2.refGene.LENGTH) head(panTro2.refGene.LENGTH)data(panTro2.refGene.LENGTH) head(panTro2.refGene.LENGTH)
panTro2.xenoRefGene.LENGTH is an R object which maps transcripts to the length (in bp) of their mature mRNA transcripts. Where available, it will also provide the mapping between a gene ID and its associated transcripts. The data is obtained from the UCSC table browser (http://genome.ucsc.edu/cgi-bin/hgTables) using the xenoRefGene table.
The data file was made by calling downloadLengthFromUCSC(panTro2, xenoRefGene) on the date on which the package was last updated.
data(panTro2.xenoRefGene.LENGTH) head(panTro2.xenoRefGene.LENGTH)data(panTro2.xenoRefGene.LENGTH) head(panTro2.xenoRefGene.LENGTH)
petMar1.xenoRefGene.LENGTH is an R object which maps transcripts to the length (in bp) of their mature mRNA transcripts. Where available, it will also provide the mapping between a gene ID and its associated transcripts. The data is obtained from the UCSC table browser (http://genome.ucsc.edu/cgi-bin/hgTables) using the xenoRefGene table.
The data file was made by calling downloadLengthFromUCSC(petMar1, xenoRefGene) on the date on which the package was last updated.
data(petMar1.xenoRefGene.LENGTH) head(petMar1.xenoRefGene.LENGTH)data(petMar1.xenoRefGene.LENGTH) head(petMar1.xenoRefGene.LENGTH)
ponAbe2.ensGene.LENGTH is an R object which maps transcripts to the length (in bp) of their mature mRNA transcripts. Where available, it will also provide the mapping between a gene ID and its associated transcripts. The data is obtained from the UCSC table browser (http://genome.ucsc.edu/cgi-bin/hgTables) using the ensGene table.
The data file was made by calling downloadLengthFromUCSC(ponAbe2, ensGene) on the date on which the package was last updated.
data(ponAbe2.ensGene.LENGTH) head(ponAbe2.ensGene.LENGTH)data(ponAbe2.ensGene.LENGTH) head(ponAbe2.ensGene.LENGTH)
ponAbe2.geneSymbol.LENGTH is an R object which maps transcripts to the length (in bp) of their mature mRNA transcripts. Where available, it will also provide the mapping between a gene ID and its associated transcripts. The data is obtained from the UCSC table browser (http://genome.ucsc.edu/cgi-bin/hgTables) using the geneSymbol table.
The data file was made by calling downloadLengthFromUCSC(ponAbe2, geneSymbol) on the date on which the package was last updated.
data(ponAbe2.geneSymbol.LENGTH) head(ponAbe2.geneSymbol.LENGTH)data(ponAbe2.geneSymbol.LENGTH) head(ponAbe2.geneSymbol.LENGTH)
ponAbe2.genscan.LENGTH is an R object which maps transcripts to the length (in bp) of their mature mRNA transcripts. Where available, it will also provide the mapping between a gene ID and its associated transcripts. The data is obtained from the UCSC table browser (http://genome.ucsc.edu/cgi-bin/hgTables) using the genscan table.
The data file was made by calling downloadLengthFromUCSC(ponAbe2, genscan) on the date on which the package was last updated.
data(ponAbe2.genscan.LENGTH) head(ponAbe2.genscan.LENGTH)data(ponAbe2.genscan.LENGTH) head(ponAbe2.genscan.LENGTH)
ponAbe2.nscanGene.LENGTH is an R object which maps transcripts to the length (in bp) of their mature mRNA transcripts. Where available, it will also provide the mapping between a gene ID and its associated transcripts. The data is obtained from the UCSC table browser (http://genome.ucsc.edu/cgi-bin/hgTables) using the nscanGene table.
The data file was made by calling downloadLengthFromUCSC(ponAbe2, nscanGene) on the date on which the package was last updated.
data(ponAbe2.nscanGene.LENGTH) head(ponAbe2.nscanGene.LENGTH)data(ponAbe2.nscanGene.LENGTH) head(ponAbe2.nscanGene.LENGTH)
ponAbe2.refGene.LENGTH is an R object which maps transcripts to the length (in bp) of their mature mRNA transcripts. Where available, it will also provide the mapping between a gene ID and its associated transcripts. The data is obtained from the UCSC table browser (http://genome.ucsc.edu/cgi-bin/hgTables) using the refGene table.
The data file was made by calling downloadLengthFromUCSC(ponAbe2, refGene) on the date on which the package was last updated.
data(ponAbe2.refGene.LENGTH) head(ponAbe2.refGene.LENGTH)data(ponAbe2.refGene.LENGTH) head(ponAbe2.refGene.LENGTH)
ponAbe2.xenoRefGene.LENGTH is an R object which maps transcripts to the length (in bp) of their mature mRNA transcripts. Where available, it will also provide the mapping between a gene ID and its associated transcripts. The data is obtained from the UCSC table browser (http://genome.ucsc.edu/cgi-bin/hgTables) using the xenoRefGene table.
The data file was made by calling downloadLengthFromUCSC(ponAbe2, xenoRefGene) on the date on which the package was last updated.
data(ponAbe2.xenoRefGene.LENGTH) head(ponAbe2.xenoRefGene.LENGTH)data(ponAbe2.xenoRefGene.LENGTH) head(ponAbe2.xenoRefGene.LENGTH)
priPac1.xenoRefGene.LENGTH is an R object which maps transcripts to the length (in bp) of their mature mRNA transcripts. Where available, it will also provide the mapping between a gene ID and its associated transcripts. The data is obtained from the UCSC table browser (http://genome.ucsc.edu/cgi-bin/hgTables) using the xenoRefGene table.
The data file was made by calling downloadLengthFromUCSC(priPac1, xenoRefGene) on the date on which the package was last updated.
data(priPac1.xenoRefGene.LENGTH) head(priPac1.xenoRefGene.LENGTH)data(priPac1.xenoRefGene.LENGTH) head(priPac1.xenoRefGene.LENGTH)
rheMac2.ensGene.LENGTH is an R object which maps transcripts to the length (in bp) of their mature mRNA transcripts. Where available, it will also provide the mapping between a gene ID and its associated transcripts. The data is obtained from the UCSC table browser (http://genome.ucsc.edu/cgi-bin/hgTables) using the ensGene table.
The data file was made by calling downloadLengthFromUCSC(rheMac2, ensGene) on the date on which the package was last updated.
data(rheMac2.ensGene.LENGTH) head(rheMac2.ensGene.LENGTH)data(rheMac2.ensGene.LENGTH) head(rheMac2.ensGene.LENGTH)
rheMac2.geneid.LENGTH is an R object which maps transcripts to the length (in bp) of their mature mRNA transcripts. Where available, it will also provide the mapping between a gene ID and its associated transcripts. The data is obtained from the UCSC table browser (http://genome.ucsc.edu/cgi-bin/hgTables) using the geneid table.
The data file was made by calling downloadLengthFromUCSC(rheMac2, geneid) on the date on which the package was last updated.
data(rheMac2.geneid.LENGTH) head(rheMac2.geneid.LENGTH)data(rheMac2.geneid.LENGTH) head(rheMac2.geneid.LENGTH)
rheMac2.geneSymbol.LENGTH is an R object which maps transcripts to the length (in bp) of their mature mRNA transcripts. Where available, it will also provide the mapping between a gene ID and its associated transcripts. The data is obtained from the UCSC table browser (http://genome.ucsc.edu/cgi-bin/hgTables) using the geneSymbol table.
The data file was made by calling downloadLengthFromUCSC(rheMac2, geneSymbol) on the date on which the package was last updated.
data(rheMac2.geneSymbol.LENGTH) head(rheMac2.geneSymbol.LENGTH)data(rheMac2.geneSymbol.LENGTH) head(rheMac2.geneSymbol.LENGTH)
rheMac2.nscanGene.LENGTH is an R object which maps transcripts to the length (in bp) of their mature mRNA transcripts. Where available, it will also provide the mapping between a gene ID and its associated transcripts. The data is obtained from the UCSC table browser (http://genome.ucsc.edu/cgi-bin/hgTables) using the nscanGene table.
The data file was made by calling downloadLengthFromUCSC(rheMac2, nscanGene) on the date on which the package was last updated.
data(rheMac2.nscanGene.LENGTH) head(rheMac2.nscanGene.LENGTH)data(rheMac2.nscanGene.LENGTH) head(rheMac2.nscanGene.LENGTH)
rheMac2.refGene.LENGTH is an R object which maps transcripts to the length (in bp) of their mature mRNA transcripts. Where available, it will also provide the mapping between a gene ID and its associated transcripts. The data is obtained from the UCSC table browser (http://genome.ucsc.edu/cgi-bin/hgTables) using the refGene table.
The data file was made by calling downloadLengthFromUCSC(rheMac2, refGene) on the date on which the package was last updated.
data(rheMac2.refGene.LENGTH) head(rheMac2.refGene.LENGTH)data(rheMac2.refGene.LENGTH) head(rheMac2.refGene.LENGTH)
rheMac2.sgpGene.LENGTH is an R object which maps transcripts to the length (in bp) of their mature mRNA transcripts. Where available, it will also provide the mapping between a gene ID and its associated transcripts. The data is obtained from the UCSC table browser (http://genome.ucsc.edu/cgi-bin/hgTables) using the sgpGene table.
The data file was made by calling downloadLengthFromUCSC(rheMac2, sgpGene) on the date on which the package was last updated.
data(rheMac2.sgpGene.LENGTH) head(rheMac2.sgpGene.LENGTH)data(rheMac2.sgpGene.LENGTH) head(rheMac2.sgpGene.LENGTH)
rheMac2.xenoRefGene.LENGTH is an R object which maps transcripts to the length (in bp) of their mature mRNA transcripts. Where available, it will also provide the mapping between a gene ID and its associated transcripts. The data is obtained from the UCSC table browser (http://genome.ucsc.edu/cgi-bin/hgTables) using the xenoRefGene table.
The data file was made by calling downloadLengthFromUCSC(rheMac2, xenoRefGene) on the date on which the package was last updated.
data(rheMac2.xenoRefGene.LENGTH) head(rheMac2.xenoRefGene.LENGTH)data(rheMac2.xenoRefGene.LENGTH) head(rheMac2.xenoRefGene.LENGTH)
rn3.ensGene.LENGTH is an R object which maps transcripts to the length (in bp) of their mature mRNA transcripts. Where available, it will also provide the mapping between a gene ID and its associated transcripts. The data is obtained from the UCSC table browser (http://genome.ucsc.edu/cgi-bin/hgTables) using the ensGene table.
The data file was made by calling downloadLengthFromUCSC(rn3, ensGene) on the date on which the package was last updated.
data(rn3.ensGene.LENGTH) head(rn3.ensGene.LENGTH)data(rn3.ensGene.LENGTH) head(rn3.ensGene.LENGTH)
rn3.geneid.LENGTH is an R object which maps transcripts to the length (in bp) of their mature mRNA transcripts. Where available, it will also provide the mapping between a gene ID and its associated transcripts. The data is obtained from the UCSC table browser (http://genome.ucsc.edu/cgi-bin/hgTables) using the geneid table.
The data file was made by calling downloadLengthFromUCSC(rn3, geneid) on the date on which the package was last updated.
data(rn3.geneid.LENGTH) head(rn3.geneid.LENGTH)data(rn3.geneid.LENGTH) head(rn3.geneid.LENGTH)
rn3.geneSymbol.LENGTH is an R object which maps transcripts to the length (in bp) of their mature mRNA transcripts. Where available, it will also provide the mapping between a gene ID and its associated transcripts. The data is obtained from the UCSC table browser (http://genome.ucsc.edu/cgi-bin/hgTables) using the geneSymbol table.
The data file was made by calling downloadLengthFromUCSC(rn3, geneSymbol) on the date on which the package was last updated.
data(rn3.geneSymbol.LENGTH) head(rn3.geneSymbol.LENGTH)data(rn3.geneSymbol.LENGTH) head(rn3.geneSymbol.LENGTH)
rn3.genscan.LENGTH is an R object which maps transcripts to the length (in bp) of their mature mRNA transcripts. Where available, it will also provide the mapping between a gene ID and its associated transcripts. The data is obtained from the UCSC table browser (http://genome.ucsc.edu/cgi-bin/hgTables) using the genscan table.
The data file was made by calling downloadLengthFromUCSC(rn3, genscan) on the date on which the package was last updated.
data(rn3.genscan.LENGTH) head(rn3.genscan.LENGTH)data(rn3.genscan.LENGTH) head(rn3.genscan.LENGTH)
rn3.knownGene.LENGTH is an R object which maps transcripts to the length (in bp) of their mature mRNA transcripts. Where available, it will also provide the mapping between a gene ID and its associated transcripts. The data is obtained from the UCSC table browser (http://genome.ucsc.edu/cgi-bin/hgTables) using the knownGene table.
The data file was made by calling downloadLengthFromUCSC(rn3, knownGene) on the date on which the package was last updated.
data(rn3.knownGene.LENGTH) head(rn3.knownGene.LENGTH)data(rn3.knownGene.LENGTH) head(rn3.knownGene.LENGTH)
rn3.nscanGene.LENGTH is an R object which maps transcripts to the length (in bp) of their mature mRNA transcripts. Where available, it will also provide the mapping between a gene ID and its associated transcripts. The data is obtained from the UCSC table browser (http://genome.ucsc.edu/cgi-bin/hgTables) using the nscanGene table.
The data file was made by calling downloadLengthFromUCSC(rn3, nscanGene) on the date on which the package was last updated.
data(rn3.nscanGene.LENGTH) head(rn3.nscanGene.LENGTH)data(rn3.nscanGene.LENGTH) head(rn3.nscanGene.LENGTH)
rn3.refGene.LENGTH is an R object which maps transcripts to the length (in bp) of their mature mRNA transcripts. Where available, it will also provide the mapping between a gene ID and its associated transcripts. The data is obtained from the UCSC table browser (http://genome.ucsc.edu/cgi-bin/hgTables) using the refGene table.
The data file was made by calling downloadLengthFromUCSC(rn3, refGene) on the date on which the package was last updated.
data(rn3.refGene.LENGTH) head(rn3.refGene.LENGTH)data(rn3.refGene.LENGTH) head(rn3.refGene.LENGTH)
rn3.sgpGene.LENGTH is an R object which maps transcripts to the length (in bp) of their mature mRNA transcripts. Where available, it will also provide the mapping between a gene ID and its associated transcripts. The data is obtained from the UCSC table browser (http://genome.ucsc.edu/cgi-bin/hgTables) using the sgpGene table.
The data file was made by calling downloadLengthFromUCSC(rn3, sgpGene) on the date on which the package was last updated.
data(rn3.sgpGene.LENGTH) head(rn3.sgpGene.LENGTH)data(rn3.sgpGene.LENGTH) head(rn3.sgpGene.LENGTH)
rn3.xenoRefGene.LENGTH is an R object which maps transcripts to the length (in bp) of their mature mRNA transcripts. Where available, it will also provide the mapping between a gene ID and its associated transcripts. The data is obtained from the UCSC table browser (http://genome.ucsc.edu/cgi-bin/hgTables) using the xenoRefGene table.
The data file was made by calling downloadLengthFromUCSC(rn3, xenoRefGene) on the date on which the package was last updated.
data(rn3.xenoRefGene.LENGTH) head(rn3.xenoRefGene.LENGTH)data(rn3.xenoRefGene.LENGTH) head(rn3.xenoRefGene.LENGTH)
rn4.ensGene.LENGTH is an R object which maps transcripts to the length (in bp) of their mature mRNA transcripts. Where available, it will also provide the mapping between a gene ID and its associated transcripts. The data is obtained from the UCSC table browser (http://genome.ucsc.edu/cgi-bin/hgTables) using the ensGene table.
The data file was made by calling downloadLengthFromUCSC(rn4, ensGene) on the date on which the package was last updated.
data(rn4.ensGene.LENGTH) head(rn4.ensGene.LENGTH)data(rn4.ensGene.LENGTH) head(rn4.ensGene.LENGTH)
rn4.geneid.LENGTH is an R object which maps transcripts to the length (in bp) of their mature mRNA transcripts. Where available, it will also provide the mapping between a gene ID and its associated transcripts. The data is obtained from the UCSC table browser (http://genome.ucsc.edu/cgi-bin/hgTables) using the geneid table.
The data file was made by calling downloadLengthFromUCSC(rn4, geneid) on the date on which the package was last updated.
data(rn4.geneid.LENGTH) head(rn4.geneid.LENGTH)data(rn4.geneid.LENGTH) head(rn4.geneid.LENGTH)
rn4.geneSymbol.LENGTH is an R object which maps transcripts to the length (in bp) of their mature mRNA transcripts. Where available, it will also provide the mapping between a gene ID and its associated transcripts. The data is obtained from the UCSC table browser (http://genome.ucsc.edu/cgi-bin/hgTables) using the geneSymbol table.
The data file was made by calling downloadLengthFromUCSC(rn4, geneSymbol) on the date on which the package was last updated.
data(rn4.geneSymbol.LENGTH) head(rn4.geneSymbol.LENGTH)data(rn4.geneSymbol.LENGTH) head(rn4.geneSymbol.LENGTH)
rn4.genscan.LENGTH is an R object which maps transcripts to the length (in bp) of their mature mRNA transcripts. Where available, it will also provide the mapping between a gene ID and its associated transcripts. The data is obtained from the UCSC table browser (http://genome.ucsc.edu/cgi-bin/hgTables) using the genscan table.
The data file was made by calling downloadLengthFromUCSC(rn4, genscan) on the date on which the package was last updated.
data(rn4.genscan.LENGTH) head(rn4.genscan.LENGTH)data(rn4.genscan.LENGTH) head(rn4.genscan.LENGTH)
rn4.knownGene.LENGTH is an R object which maps transcripts to the length (in bp) of their mature mRNA transcripts. Where available, it will also provide the mapping between a gene ID and its associated transcripts. The data is obtained from the UCSC table browser (http://genome.ucsc.edu/cgi-bin/hgTables) using the knownGene table.
The data file was made by calling downloadLengthFromUCSC(rn4, knownGene) on the date on which the package was last updated.
data(rn4.knownGene.LENGTH) head(rn4.knownGene.LENGTH)data(rn4.knownGene.LENGTH) head(rn4.knownGene.LENGTH)
rn4.nscanGene.LENGTH is an R object which maps transcripts to the length (in bp) of their mature mRNA transcripts. Where available, it will also provide the mapping between a gene ID and its associated transcripts. The data is obtained from the UCSC table browser (http://genome.ucsc.edu/cgi-bin/hgTables) using the nscanGene table.
The data file was made by calling downloadLengthFromUCSC(rn4, nscanGene) on the date on which the package was last updated.
data(rn4.nscanGene.LENGTH) head(rn4.nscanGene.LENGTH)data(rn4.nscanGene.LENGTH) head(rn4.nscanGene.LENGTH)
rn4.refGene.LENGTH is an R object which maps transcripts to the length (in bp) of their mature mRNA transcripts. Where available, it will also provide the mapping between a gene ID and its associated transcripts. The data is obtained from the UCSC table browser (http://genome.ucsc.edu/cgi-bin/hgTables) using the refGene table.
The data file was made by calling downloadLengthFromUCSC(rn4, refGene) on the date on which the package was last updated.
data(rn4.refGene.LENGTH) head(rn4.refGene.LENGTH)data(rn4.refGene.LENGTH) head(rn4.refGene.LENGTH)
rn4.sgpGene.LENGTH is an R object which maps transcripts to the length (in bp) of their mature mRNA transcripts. Where available, it will also provide the mapping between a gene ID and its associated transcripts. The data is obtained from the UCSC table browser (http://genome.ucsc.edu/cgi-bin/hgTables) using the sgpGene table.
The data file was made by calling downloadLengthFromUCSC(rn4, sgpGene) on the date on which the package was last updated.
data(rn4.sgpGene.LENGTH) head(rn4.sgpGene.LENGTH)data(rn4.sgpGene.LENGTH) head(rn4.sgpGene.LENGTH)
rn4.xenoRefGene.LENGTH is an R object which maps transcripts to the length (in bp) of their mature mRNA transcripts. Where available, it will also provide the mapping between a gene ID and its associated transcripts. The data is obtained from the UCSC table browser (http://genome.ucsc.edu/cgi-bin/hgTables) using the xenoRefGene table.
The data file was made by calling downloadLengthFromUCSC(rn4, xenoRefGene) on the date on which the package was last updated.
data(rn4.xenoRefGene.LENGTH) head(rn4.xenoRefGene.LENGTH)data(rn4.xenoRefGene.LENGTH) head(rn4.xenoRefGene.LENGTH)
sacCer1.ensGene.LENGTH is an R object which maps transcripts to the length (in bp) of their mature mRNA transcripts. Where available, it will also provide the mapping between a gene ID and its associated transcripts. The data is obtained from the UCSC table browser (http://genome.ucsc.edu/cgi-bin/hgTables) using the ensGene table.
The data file was made by calling downloadLengthFromUCSC(sacCer1, ensGene) on the date on which the package was last updated.
data(sacCer1.ensGene.LENGTH) head(sacCer1.ensGene.LENGTH)data(sacCer1.ensGene.LENGTH) head(sacCer1.ensGene.LENGTH)
sacCer2.ensGene.LENGTH is an R object which maps transcripts to the length (in bp) of their mature mRNA transcripts. Where available, it will also provide the mapping between a gene ID and its associated transcripts. The data is obtained from the UCSC table browser (http://genome.ucsc.edu/cgi-bin/hgTables) using the ensGene table.
The data file was made by calling downloadLengthFromUCSC(sacCer2, ensGene) on the date on which the package was last updated.
data(sacCer2.ensGene.LENGTH) head(sacCer2.ensGene.LENGTH)data(sacCer2.ensGene.LENGTH) head(sacCer2.ensGene.LENGTH)
strPur1.geneSymbol.LENGTH is an R object which maps transcripts to the length (in bp) of their mature mRNA transcripts. Where available, it will also provide the mapping between a gene ID and its associated transcripts. The data is obtained from the UCSC table browser (http://genome.ucsc.edu/cgi-bin/hgTables) using the geneSymbol table.
The data file was made by calling downloadLengthFromUCSC(strPur1, geneSymbol) on the date on which the package was last updated.
data(strPur1.geneSymbol.LENGTH) head(strPur1.geneSymbol.LENGTH)data(strPur1.geneSymbol.LENGTH) head(strPur1.geneSymbol.LENGTH)
strPur1.genscan.LENGTH is an R object which maps transcripts to the length (in bp) of their mature mRNA transcripts. Where available, it will also provide the mapping between a gene ID and its associated transcripts. The data is obtained from the UCSC table browser (http://genome.ucsc.edu/cgi-bin/hgTables) using the genscan table.
The data file was made by calling downloadLengthFromUCSC(strPur1, genscan) on the date on which the package was last updated.
data(strPur1.genscan.LENGTH) head(strPur1.genscan.LENGTH)data(strPur1.genscan.LENGTH) head(strPur1.genscan.LENGTH)
strPur1.refGene.LENGTH is an R object which maps transcripts to the length (in bp) of their mature mRNA transcripts. Where available, it will also provide the mapping between a gene ID and its associated transcripts. The data is obtained from the UCSC table browser (http://genome.ucsc.edu/cgi-bin/hgTables) using the refGene table.
The data file was made by calling downloadLengthFromUCSC(strPur1, refGene) on the date on which the package was last updated.
data(strPur1.refGene.LENGTH) head(strPur1.refGene.LENGTH)data(strPur1.refGene.LENGTH) head(strPur1.refGene.LENGTH)
strPur1.xenoRefGene.LENGTH is an R object which maps transcripts to the length (in bp) of their mature mRNA transcripts. Where available, it will also provide the mapping between a gene ID and its associated transcripts. The data is obtained from the UCSC table browser (http://genome.ucsc.edu/cgi-bin/hgTables) using the xenoRefGene table.
The data file was made by calling downloadLengthFromUCSC(strPur1, xenoRefGene) on the date on which the package was last updated.
data(strPur1.xenoRefGene.LENGTH) head(strPur1.xenoRefGene.LENGTH)data(strPur1.xenoRefGene.LENGTH) head(strPur1.xenoRefGene.LENGTH)
strPur2.geneSymbol.LENGTH is an R object which maps transcripts to the length (in bp) of their mature mRNA transcripts. Where available, it will also provide the mapping between a gene ID and its associated transcripts. The data is obtained from the UCSC table browser (http://genome.ucsc.edu/cgi-bin/hgTables) using the geneSymbol table.
The data file was made by calling downloadLengthFromUCSC(strPur2, geneSymbol) on the date on which the package was last updated.
data(strPur2.geneSymbol.LENGTH) head(strPur2.geneSymbol.LENGTH)data(strPur2.geneSymbol.LENGTH) head(strPur2.geneSymbol.LENGTH)
strPur2.genscan.LENGTH is an R object which maps transcripts to the length (in bp) of their mature mRNA transcripts. Where available, it will also provide the mapping between a gene ID and its associated transcripts. The data is obtained from the UCSC table browser (http://genome.ucsc.edu/cgi-bin/hgTables) using the genscan table.
The data file was made by calling downloadLengthFromUCSC(strPur2, genscan) on the date on which the package was last updated.
data(strPur2.genscan.LENGTH) head(strPur2.genscan.LENGTH)data(strPur2.genscan.LENGTH) head(strPur2.genscan.LENGTH)
strPur2.refGene.LENGTH is an R object which maps transcripts to the length (in bp) of their mature mRNA transcripts. Where available, it will also provide the mapping between a gene ID and its associated transcripts. The data is obtained from the UCSC table browser (http://genome.ucsc.edu/cgi-bin/hgTables) using the refGene table.
The data file was made by calling downloadLengthFromUCSC(strPur2, refGene) on the date on which the package was last updated.
data(strPur2.refGene.LENGTH) head(strPur2.refGene.LENGTH)data(strPur2.refGene.LENGTH) head(strPur2.refGene.LENGTH)
strPur2.xenoRefGene.LENGTH is an R object which maps transcripts to the length (in bp) of their mature mRNA transcripts. Where available, it will also provide the mapping between a gene ID and its associated transcripts. The data is obtained from the UCSC table browser (http://genome.ucsc.edu/cgi-bin/hgTables) using the xenoRefGene table.
The data file was made by calling downloadLengthFromUCSC(strPur2, xenoRefGene) on the date on which the package was last updated.
data(strPur2.xenoRefGene.LENGTH) head(strPur2.xenoRefGene.LENGTH)data(strPur2.xenoRefGene.LENGTH) head(strPur2.xenoRefGene.LENGTH)
Lists supported gene ID formats
supportedGeneIDs()supportedGeneIDs()
Uses the supportedUCSCtables function from the GenomicFeatures
package to obtain a list of gene ID formats available from the UCSC genome
browser. The db column gives the gene ID formats which are provided
to the id arguement of various functions. The track and subtrack
columns are the names of the UCSC track/subtrack from which information is
fetched.
The GeneID column lists the "full name" of the gene ID format where
available.
The final column, headed AvailableGenomes lists the genomes for which
there is a local copy of the length information avaible for the gene ID
format listed in the geneLenDataBase package.
A data.frame containing supported gene ID formats.
Matthew D. Young [email protected]
supportedGeneIDs()supportedGeneIDs()
Lists supported genomes
supportedGenomes()supportedGenomes()
Uses the ucscGenomes() function from the rtracklayer package
to obtain a list of genomes available from the UCSC genome browser. The
db column lists genomes as they are provided to the genome
arguement of various functions.
The final column, headed AvailableGeneIDs lists the gene ID formats
for which there is a local copy of the length information avaible for the
genome listed in the geneLenDataBase package.
A data.frame containing supported genomes.
Matthew D. Young [email protected]
supportedGenomes()supportedGenomes()
taeGut1.ensGene.LENGTH is an R object which maps transcripts to the length (in bp) of their mature mRNA transcripts. Where available, it will also provide the mapping between a gene ID and its associated transcripts. The data is obtained from the UCSC table browser (http://genome.ucsc.edu/cgi-bin/hgTables) using the ensGene table.
The data file was made by calling downloadLengthFromUCSC(taeGut1, ensGene) on the date on which the package was last updated.
data(taeGut1.ensGene.LENGTH) head(taeGut1.ensGene.LENGTH)data(taeGut1.ensGene.LENGTH) head(taeGut1.ensGene.LENGTH)
taeGut1.geneSymbol.LENGTH is an R object which maps transcripts to the length (in bp) of their mature mRNA transcripts. Where available, it will also provide the mapping between a gene ID and its associated transcripts. The data is obtained from the UCSC table browser (http://genome.ucsc.edu/cgi-bin/hgTables) using the geneSymbol table.
The data file was made by calling downloadLengthFromUCSC(taeGut1, geneSymbol) on the date on which the package was last updated.
data(taeGut1.geneSymbol.LENGTH) head(taeGut1.geneSymbol.LENGTH)data(taeGut1.geneSymbol.LENGTH) head(taeGut1.geneSymbol.LENGTH)
taeGut1.genscan.LENGTH is an R object which maps transcripts to the length (in bp) of their mature mRNA transcripts. Where available, it will also provide the mapping between a gene ID and its associated transcripts. The data is obtained from the UCSC table browser (http://genome.ucsc.edu/cgi-bin/hgTables) using the genscan table.
The data file was made by calling downloadLengthFromUCSC(taeGut1, genscan) on the date on which the package was last updated.
data(taeGut1.genscan.LENGTH) head(taeGut1.genscan.LENGTH)data(taeGut1.genscan.LENGTH) head(taeGut1.genscan.LENGTH)
taeGut1.nscanGene.LENGTH is an R object which maps transcripts to the length (in bp) of their mature mRNA transcripts. Where available, it will also provide the mapping between a gene ID and its associated transcripts. The data is obtained from the UCSC table browser (http://genome.ucsc.edu/cgi-bin/hgTables) using the nscanGene table.
The data file was made by calling downloadLengthFromUCSC(taeGut1, nscanGene) on the date on which the package was last updated.
data(taeGut1.nscanGene.LENGTH) head(taeGut1.nscanGene.LENGTH)data(taeGut1.nscanGene.LENGTH) head(taeGut1.nscanGene.LENGTH)
taeGut1.refGene.LENGTH is an R object which maps transcripts to the length (in bp) of their mature mRNA transcripts. Where available, it will also provide the mapping between a gene ID and its associated transcripts. The data is obtained from the UCSC table browser (http://genome.ucsc.edu/cgi-bin/hgTables) using the refGene table.
The data file was made by calling downloadLengthFromUCSC(taeGut1, refGene) on the date on which the package was last updated.
data(taeGut1.refGene.LENGTH) head(taeGut1.refGene.LENGTH)data(taeGut1.refGene.LENGTH) head(taeGut1.refGene.LENGTH)
taeGut1.xenoRefGene.LENGTH is an R object which maps transcripts to the length (in bp) of their mature mRNA transcripts. Where available, it will also provide the mapping between a gene ID and its associated transcripts. The data is obtained from the UCSC table browser (http://genome.ucsc.edu/cgi-bin/hgTables) using the xenoRefGene table.
The data file was made by calling downloadLengthFromUCSC(taeGut1, xenoRefGene) on the date on which the package was last updated.
data(taeGut1.xenoRefGene.LENGTH) head(taeGut1.xenoRefGene.LENGTH)data(taeGut1.xenoRefGene.LENGTH) head(taeGut1.xenoRefGene.LENGTH)
tetNig1.ensGene.LENGTH is an R object which maps transcripts to the length (in bp) of their mature mRNA transcripts. Where available, it will also provide the mapping between a gene ID and its associated transcripts. The data is obtained from the UCSC table browser (http://genome.ucsc.edu/cgi-bin/hgTables) using the ensGene table.
The data file was made by calling downloadLengthFromUCSC(tetNig1, ensGene) on the date on which the package was last updated.
data(tetNig1.ensGene.LENGTH) head(tetNig1.ensGene.LENGTH)data(tetNig1.ensGene.LENGTH) head(tetNig1.ensGene.LENGTH)
tetNig1.geneid.LENGTH is an R object which maps transcripts to the length (in bp) of their mature mRNA transcripts. Where available, it will also provide the mapping between a gene ID and its associated transcripts. The data is obtained from the UCSC table browser (http://genome.ucsc.edu/cgi-bin/hgTables) using the geneid table.
The data file was made by calling downloadLengthFromUCSC(tetNig1, geneid) on the date on which the package was last updated.
data(tetNig1.geneid.LENGTH) head(tetNig1.geneid.LENGTH)data(tetNig1.geneid.LENGTH) head(tetNig1.geneid.LENGTH)
tetNig1.genscan.LENGTH is an R object which maps transcripts to the length (in bp) of their mature mRNA transcripts. Where available, it will also provide the mapping between a gene ID and its associated transcripts. The data is obtained from the UCSC table browser (http://genome.ucsc.edu/cgi-bin/hgTables) using the genscan table.
The data file was made by calling downloadLengthFromUCSC(tetNig1, genscan) on the date on which the package was last updated.
data(tetNig1.genscan.LENGTH) head(tetNig1.genscan.LENGTH)data(tetNig1.genscan.LENGTH) head(tetNig1.genscan.LENGTH)
tetNig1.nscanGene.LENGTH is an R object which maps transcripts to the length (in bp) of their mature mRNA transcripts. Where available, it will also provide the mapping between a gene ID and its associated transcripts. The data is obtained from the UCSC table browser (http://genome.ucsc.edu/cgi-bin/hgTables) using the nscanGene table.
The data file was made by calling downloadLengthFromUCSC(tetNig1, nscanGene) on the date on which the package was last updated.
data(tetNig1.nscanGene.LENGTH) head(tetNig1.nscanGene.LENGTH)data(tetNig1.nscanGene.LENGTH) head(tetNig1.nscanGene.LENGTH)
tetNig2.ensGene.LENGTH is an R object which maps transcripts to the length (in bp) of their mature mRNA transcripts. Where available, it will also provide the mapping between a gene ID and its associated transcripts. The data is obtained from the UCSC table browser (http://genome.ucsc.edu/cgi-bin/hgTables) using the ensGene table.
The data file was made by calling downloadLengthFromUCSC(tetNig2, ensGene) on the date on which the package was last updated.
data(tetNig2.ensGene.LENGTH) head(tetNig2.ensGene.LENGTH)data(tetNig2.ensGene.LENGTH) head(tetNig2.ensGene.LENGTH)
Removes all factors from a variable in a sensible way.
unfactor(var)unfactor(var)
var |
The variable from which you want the factors removed. |
As factors are their own type, to remove factors we must convert each level
into another type. This is currently done using "typeless" behaviour: a
factor is converted to a numeric vector if this can be done without inducing
NAs, otherwise it is coerced using as.character. Currently supported types
are: factor, data.frame and list.
The variable with all factors converted to characters or numbers
(see details).
Matthew D. Young [email protected]
# A named factor x <- factor(sample(1:6, 100, replace=TRUE)) names(x) <- paste("Roll.No", 1:100, sep='.') x unfactor(x) # A data.frame x <- data.frame(player <- c("Alice", "Bob", "Mary", "Fred"), score <- factor(c(9, 7, 8, 9)), stringsAsFactors=TRUE) x$player x$score y <- unfactor(x) y$player y$score# A named factor x <- factor(sample(1:6, 100, replace=TRUE)) names(x) <- paste("Roll.No", 1:100, sep='.') x unfactor(x) # A data.frame x <- data.frame(player <- c("Alice", "Bob", "Mary", "Fred"), score <- factor(c(9, 7, 8, 9)), stringsAsFactors=TRUE) x$player x$score y <- unfactor(x) y$player y$score
xenTro1.genscan.LENGTH is an R object which maps transcripts to the length (in bp) of their mature mRNA transcripts. Where available, it will also provide the mapping between a gene ID and its associated transcripts. The data is obtained from the UCSC table browser (http://genome.ucsc.edu/cgi-bin/hgTables) using the genscan table.
The data file was made by calling downloadLengthFromUCSC(xenTro1, genscan) on the date on which the package was last updated.
data(xenTro1.genscan.LENGTH) head(xenTro1.genscan.LENGTH)data(xenTro1.genscan.LENGTH) head(xenTro1.genscan.LENGTH)
xenTro2.ensGene.LENGTH is an R object which maps transcripts to the length (in bp) of their mature mRNA transcripts. Where available, it will also provide the mapping between a gene ID and its associated transcripts. The data is obtained from the UCSC table browser (http://genome.ucsc.edu/cgi-bin/hgTables) using the ensGene table.
The data file was made by calling downloadLengthFromUCSC(xenTro2, ensGene) on the date on which the package was last updated.
data(xenTro2.ensGene.LENGTH) head(xenTro2.ensGene.LENGTH)data(xenTro2.ensGene.LENGTH) head(xenTro2.ensGene.LENGTH)
xenTro2.geneSymbol.LENGTH is an R object which maps transcripts to the length (in bp) of their mature mRNA transcripts. Where available, it will also provide the mapping between a gene ID and its associated transcripts. The data is obtained from the UCSC table browser (http://genome.ucsc.edu/cgi-bin/hgTables) using the geneSymbol table.
The data file was made by calling downloadLengthFromUCSC(xenTro2, geneSymbol) on the date on which the package was last updated.
data(xenTro2.geneSymbol.LENGTH) head(xenTro2.geneSymbol.LENGTH)data(xenTro2.geneSymbol.LENGTH) head(xenTro2.geneSymbol.LENGTH)
xenTro2.genscan.LENGTH is an R object which maps transcripts to the length (in bp) of their mature mRNA transcripts. Where available, it will also provide the mapping between a gene ID and its associated transcripts. The data is obtained from the UCSC table browser (http://genome.ucsc.edu/cgi-bin/hgTables) using the genscan table.
The data file was made by calling downloadLengthFromUCSC(xenTro2, genscan) on the date on which the package was last updated.
data(xenTro2.genscan.LENGTH) head(xenTro2.genscan.LENGTH)data(xenTro2.genscan.LENGTH) head(xenTro2.genscan.LENGTH)
xenTro2.refGene.LENGTH is an R object which maps transcripts to the length (in bp) of their mature mRNA transcripts. Where available, it will also provide the mapping between a gene ID and its associated transcripts. The data is obtained from the UCSC table browser (http://genome.ucsc.edu/cgi-bin/hgTables) using the refGene table.
The data file was made by calling downloadLengthFromUCSC(xenTro2, refGene) on the date on which the package was last updated.
data(xenTro2.refGene.LENGTH) head(xenTro2.refGene.LENGTH)data(xenTro2.refGene.LENGTH) head(xenTro2.refGene.LENGTH)