Package 'generegulation'
| Title: |
Finding Candidate Binding Sites for Known Transcription Factors
via Sequence Matching |
| Description: |
The binding of transcription factor proteins (TFs) to DNA
promoter regions upstream of gene transcription start sites
(TSSs) is one of the most important mechanisms by which gene
expression, and thus many cellular processes, are controlled.
Though in recent years many new kinds of data have become
available for identifying transcription factor binding sites
(TFBSs) -- ChIP-seq and DNase I hypersensitivity regions among
them -- sequence matching continues to play an important role.
In this workflow we demonstrate Bioconductor techniques for
finding candidate TF binding sites in DNA sequence using the
model organism Saccharomyces cerevisiae. The methods
demonstrated here apply equally well to other organisms. |
| Authors: |
Bioconductor Package Maintainer [aut, cre] |
| Maintainer: |
Bioconductor Package Maintainer <[email protected]> |
| License: |
Artistic-2.0 |
| Version: |
1.36.0 |
| Built: |
2026-10-09 12:22:02 UTC |
| Source: |
https://github.com/bioc/generegulation |
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