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# CITATION file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
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cff-version: 1.2.0
message: 'To cite package "getDEE2" in publications use:'
type: software
license: GPL-3.0-only
title: 'getDEE2: Programmatic access to the DEE2 RNA expression dataset'
version: 1.22.0
doi: 10.1093/gigascience/giz022
identifiers:
- type: doi
  value: 10.32614/CRAN.package.getDEE2
abstract: Digital Expression Explorer 2 (or DEE2 for short) is a repository of processed
  RNA-seq data in the form of counts. It was designed so that researchers could undertake
  re-analysis and meta-analysis of published RNA-seq studies quickly and easily. As
  of April 2020, over 1 million SRA datasets have been processed. This package provides
  an R interface to access these expression data. More information about the DEE2
  project can be found at the project homepage (http://dee2.io) and main publication
  (https://doi.org/10.1093/gigascience/giz022).
authors:
- family-names: Ziemann
  given-names: Mark 0000-0002-7688-6974
  email: mark.ziemann@gmail.com
- family-names: Kaspi
  given-names: Antony 0000-0001-6576-5862
preferred-citation:
  type: article
  title: 'Digital expression explorer 2: a repository of uniformly processed RNA sequencing
    data'
  authors:
  - family-names: Ziemann
    given-names: Mark
  - family-names: Kaspi
    given-names: Antony
  - family-names: El-Osta
    given-names: Assam
  year: '2019'
  journal: Gigascience
  doi: 10.1093/gigascience/giz022
  volume: '8'
  issue: '2019'
  start: '-12'
repository: https://bioc-release.r-universe.dev
repository-code: https://github.com/markziemann/getDEE2
commit: 73153e297e286d4756e1ec8b3c1c33cba69340c9
url: https://github.com/markziemann/getDEE2
date-released: '2026-04-28'
contact:
- family-names: Ziemann
  given-names: Mark 0000-0002-7688-6974
  email: mark.ziemann@gmail.com