Package: ggseqalign 1.6.0

Simeon Lim Rossmann

ggseqalign: Minimal Visualization of Sequence Alignments

Simple visualizations of alignments of DNA or AA sequences as well as arbitrary strings. Compatible with Biostrings and ggplot2. The plots are fully customizable using ggplot2 modifiers such as theme().

Authors:Simeon Lim Rossmann [aut, cre]

ggseqalign_1.6.0.tar.gz
ggseqalign_1.6.0.zip(r-4.7)ggseqalign_1.6.0.zip(r-4.6)ggseqalign_1.6.0.zip(r-4.5)
ggseqalign_1.6.0.tgz(r-4.6-any)ggseqalign_1.6.0.tgz(r-4.5-any)
ggseqalign_1.6.0.tar.gz(r-4.7-any)ggseqalign_1.6.0.tar.gz(r-4.6-any)
ggseqalign_1.6.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html
card.svg |card.png
ggseqalign/json (API)
NEWS

# Install 'ggseqalign' in R:
install.packages('ggseqalign', repos = c('https://bioc-release.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/simeross/ggseqalign/issues

On BioConductor:ggseqalign-1.7.0(bioc 3.24)ggseqalign-1.6.0(bioc 3.23)

alignmentmultiplesequencealignmentsoftwarevisualizationbioinformaticsggplot2-enhancementsminimalistic

4.00 score 6 scripts 2 exports 33 dependencies

Last updated from:4034a1b63a (on RELEASE_3_23). Checks:8 NOTE, 2 OK. Indexed: no.

TargetResultTimeFilesSyslog
bioc-checksNOTE174
linux-devel-x86_64NOTE283
source / vignettesOK232
linux-release-x86_64NOTE252
macos-release-arm64NOTE127
macos-oldrel-arm64NOTE107
windows-develNOTE136
windows-releaseNOTE124
windows-oldrelNOTE126
wasm-releaseOK100

Exports:alignment_tableplot_sequence_alignment

Dependencies:BiocGenericsBiostringsclicpp11crayondplyrfarvergenericsggplot2gluegtableIRangesisobandlabelinglifecyclemagrittrpillarpkgconfigpwalignR6RColorBrewerrlangS4VectorsS7scalesSeqinfotibbletidyselectutf8vctrsviridisLitewithrXVector

Quickstart Guide to ggseqalign

Rendered fromggseqalign.Rmdusingknitr::rmarkdownon Jun 21 2026.

Last update: 2025-03-03
Started: 2024-05-09

Readme and manuals

Help Manual

Help pageTopics
Alignment Tablealignment_table
Plot sequence alignmentplot_sequence_alignment