Package: globalSeq 1.40.0
globalSeq: Global Test for Counts
The method may be conceptualised as a test of overall significance in regression analysis, where the response variable is overdispersed and the number of explanatory variables exceeds the sample size. Useful for testing for association between RNA-Seq and high-dimensional data.
Authors:
globalSeq_1.40.0.tar.gz
globalSeq_1.40.0.zip(r-4.7-any)globalSeq_1.40.0.zip(r-4.6-any)globalSeq_1.40.0.zip(r-4.5-any)
globalSeq_1.40.0.tgz(r-4.6-any)globalSeq_1.40.0.tgz(r-4.5-any)
globalSeq_1.40.0.tar.gz(r-4.7-any)globalSeq_1.40.0.tar.gz(r-4.6-any)
globalSeq_1.40.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
globalSeq/json (API)
| # Install 'globalSeq' in R: |
| install.packages('globalSeq', repos = c('https://bioc-release.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/rauschenberger/globalseq/issues
On BioConductor:globalSeq-1.41.0(bioc 3.24)globalSeq-1.40.0(bioc 3.23)
geneexpressionexonarraydifferentialexpressiongenomewideassociationtranscriptomicsdimensionreductionregressionsequencingwholegenomernaseqexomeseqmirnamultiplecomparison
Last updated from:8823d24638 (on RELEASE_3_23). Checks:1 WARNING, 9 OK. Indexed: no.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| bioc-checks | WARNING | 161 | ||
| linux-devel-x86_64 | OK | 204 | ||
| source / vignettes | OK | 166 | ||
| linux-release-x86_64 | OK | 149 | ||
| macos-release-arm64 | OK | 112 | ||
| macos-oldrel-arm64 | OK | 113 | ||
| windows-devel | OK | 91 | ||
| windows-release | OK | 78 | ||
| windows-oldrel | OK | 77 | ||
| wasm-release | OK | 98 |
Exports:cursusintern.chromointern.convaintern.covintern.crudeintern.estimintern.focusintern.matrixintern.permuintern.plotintern.samintern.scoreintern.selectomnibusproprius
Dependencies:
Last update: 2020-03-02
Started: 2017-04-12
Last update: 2020-03-02
Started: 2017-04-12
Last update: 2019-01-29
Started: 2015-11-13
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Negative binomial global test | globalSeq-package globalSeq |
| Genome-wide analysis | cursus |
| Omnibus test | omnibus |
| Decomposition | proprius |
