Package: granulator
Type: Package
Title: Rapid benchmarking of methods for *in silico* deconvolution of
        bulk RNA-seq data
Version: 1.20.0
Authors@R: 
  c(person(given = "Sabina",
           family = "Pfister",
           role = c("aut", "cre"),
           email = "sabina.pfister@novartis.com"),
    person(given = "Vincent",
           family = "Kuettel",
           role = "aut"),
    person(given = "Enrico",
           family = "Ferrero",
           role = "aut"))
Description: granulator is an R package for the cell type deconvolution
        of heterogeneous tissues based on bulk RNA-seq data or single
        cell RNA-seq expression profiles. The package provides a
        unified testing interface to rapidly run and benchmark multiple
        state-of-the-art deconvolution methods. Data for the
        deconvolution of peripheral blood mononuclear cells (PBMCs)
        into individual immune cell types is provided as well.
URL: https://github.com/xanibas/granulator
BugReports: https://github.com/xanibas/granulator/issues
Depends: R (>= 4.1)
Suggests: BiocStyle, knitr, rmarkdown, testthat
VignetteBuilder: knitr
License: GPL-3
Encoding: UTF-8
LazyData: FALSE
RoxygenNote: 7.1.1
biocViews: RNASeq, GeneExpression, DifferentialExpression,
        Transcriptomics, SingleCell, StatisticalMethod, Regression
Imports: cowplot, e1071, epiR, dplyr, dtangle, ggplot2, ggplotify,
        grDevices, limSolve, magrittr, MASS, nnls, parallel, pheatmap,
        purrr, rlang, stats, tibble, tidyr, utils
PackageStatus: Deprecated
Config/pak/sysreqs: libabsl-dev libcairo2-dev cmake libfontconfig1-dev
        libfreetype6-dev libfribidi-dev libgdal-dev gdal-bin
        libgeos-dev make libharfbuzz-dev libicu-dev libjpeg-dev
        libpng-dev libtiff-dev libuv1-dev libwebp-dev libxml2-dev
        libssl-dev libproj-dev libsqlite3-dev libudunits2-dev
Repository: Bioconductor 3.23
Date/Publication: 2026-04-28 12:55:48 UTC
RemoteUrl: https://github.com/bioc/granulator
RemoteRef: RELEASE_3_23
RemoteSha: b87f30eb2fa20b33d4040542c2d93c1243eae1ff
NeedsCompilation: no
Packaged: 2026-07-16 05:21:52 UTC; root
Author: Sabina Pfister [aut, cre],
  Vincent Kuettel [aut],
  Enrico Ferrero [aut]
Maintainer: Sabina Pfister <sabina.pfister@novartis.com>