# --------------------------------------------
# CITATION file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
# --------------------------------------------
 
cff-version: 1.2.0
message: 'To cite package "graphite" in publications use:'
type: software
license: AGPL-3.0-only
title: 'graphite: GRAPH Interaction from pathway Topological Environment'
version: 1.58.0
identifiers:
- type: doi
  value: 10.32614/CRAN.package.graphite
abstract: Graph objects from pathway topology derived from KEGG, Panther, PathBank,
  PharmGKB, Reactome SMPDB and WikiPathways databases.
authors:
- family-names: Sales
  given-names: Gabriele
  email: gabriele.sales@unipd.it
  orcid: https://orcid.org/0000-0003-2078-5661
- family-names: Calura
  given-names: Enrica
  email: enrica.calura@gmail.com
- family-names: Romualdi
  given-names: Chiara
  email: chiara.romualdi@unipd.it
preferred-citation:
  type: article
  title: graphite - a Bioconductor package to convert pathway topology to gene network
  authors:
  - family-names: Sales
    given-names: Gabriele
    email: gabriele.sales@unipd.it
    orcid: https://orcid.org/0000-0003-2078-5661
  - family-names: Calura
    given-names: Enrica
    email: enrica.calura@gmail.com
  - family-names: Cavalieri
    given-names: Duccio
  - family-names: Romualdi
    given-names: Chiara
    email: chiara.romualdi@unipd.it
  journal: BMC Bioinformatics
  year: '2012'
  url: https://bmcbioinformatics.biomedcentral.com/articles/10.1186/1471-2105-13-20
repository: https://bioc-release.r-universe.dev
repository-code: https://github.com/sales-lab/graphite
commit: eca45eaf33abf01d70cbc580b634985b724adff0
url: https://github.com/sales-lab/graphite
date-released: '2026-04-26'
contact:
- family-names: Sales
  given-names: Gabriele
  email: gabriele.sales@unipd.it
  orcid: https://orcid.org/0000-0003-2078-5661
references:
- type: article
  title: metaGraphite - a new layer of pathway annotation to get metabolite networks
  authors:
  - family-names: Sales
    given-names: Gabriele
  - family-names: Calura
    given-names: Enrica
  - family-names: Romualdi
    given-names: Chiara
  journal: Bioinformatics
  year: '2018'
  url: https://academic.oup.com/bioinformatics/advance-article/doi/10.1093/bioinformatics/bty719/5090451