GNW | SynTReN | Rogers | Datasources | References:
Package: grndata 1.44.0
Pau Bellot
grndata: Synthetic Expression Data for Gene Regulatory Network Inference
Simulated expression data for five large Gene Regulatory Networks from different simulators
Authors:
grndata_1.44.0.tar.gz
grndata_1.44.0.tar.gz(r-4.7-any)grndata_1.44.0.tar.gz(r-4.6-any)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
grndata/json (API)
| # Install 'grndata' in R: |
| install.packages('grndata', repos = c('https://bioc-release.r-universe.dev', 'https://cloud.r-project.org')) |
Datasets:
- Availabledata - Available datasources
- gnw1565.data - Simulated Gene Expression Data
- gnw1565.net - Simulated Gene Expression Data
- gnw2000.data - Simulated Gene Expression Data
- gnw2000.net - Simulated Gene Expression Data
- rogers1000.data - Simulated Gene Expression Data
- rogers1000.net - Simulated Gene Expression Data
- syntren1000.data - Simulated Gene Expression Data
- syntren1000.net - Simulated Gene Expression Data
- syntren300.data - Simulated Gene Expression Data
- syntren300.net - Simulated Gene Expression Data
- toy.data - Simulated Toy example of Gene Expression Data
- toy.net - Simulated Toy example of Gene Expression Data
On BioConductor:grndata-1.45.0(data/experiment 3.24)grndata-1.44.0(data/experiment 3.23)
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
experimentdatanetworkinferencegeneexpressionmicroarraygeneregulationnetworkdatapkg
Last updated from:c1b025fdf3 (on RELEASE_3_23). Checks:1 ERROR, 2 WARNING, 1 OK. Indexed: no.
This is a data package. Data packages may be large and do not get checked across all platforms.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| bioc-checks | ERROR | 112 | ||
| linux-devel | WARNING | 156 | ||
| source / vignettes | OK | 186 | ||
| linux-release | WARNING | 146 |
Exports:getData
Dependencies:
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Available datasources | Availabledata |
| Datasource and underlying network loading | getData |
| Simulated Gene Expression Data | gnw1565.data |
| Simulated Gene Expression Data | gnw1565.net |
| Simulated Gene Expression Data | gnw2000.data |
| Simulated Gene Expression Data | gnw2000.net |
| Simulated Gene Expression Data | rogers1000.data |
| Simulated Gene Expression Data | rogers1000.net |
| Simulated Gene Expression Data | syntren1000.data |
| Simulated Gene Expression Data | syntren1000.net |
| Simulated Gene Expression Data | syntren300.data |
| Simulated Gene Expression Data | syntren300.net |
| Simulated Toy example of Gene Expression Data | toy.data |
| Simulated Toy example of Gene Expression Data | toy.net |
