# --------------------------------------------
# CITATION file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
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cff-version: 1.2.0
message: 'To cite package "groHMM" in publications use:'
type: software
license: GPL-3.0-only
title: 'groHMM: GRO-seq Analysis Pipeline'
version: 1.46.0
identifiers:
- type: doi
  value: 10.32614/CRAN.package.groHMM
abstract: A pipeline for the analysis of GRO-seq data.
authors:
- family-names: Danko
  given-names: Charles G.
  email: dankoc@gmail.com
- family-names: Chae
  given-names: Minho
  email: minho.chae@gmail.com
- family-names: Kraus
  given-names: W. Lee
  email: lee.kraus@utsouthwestern.edu
- family-names: Nandu
  given-names: Tulip
  email: tulip.nandu@utsouthwestern.edu
preferred-citation:
  type: article
  title: 'groHMM: a computational tool for identifying unannotated and cell type-specific
    transcription units from global run-on sequencing data'
  authors:
  - family-names: Chae
    given-names: Minho
    email: minho.chae@gmail.com
  - family-names: Danko
    given-names: Charles G.
    email: dankoc@gmail.com
  - family-names: Kraus
    given-names: W. Lee
    email: lee.kraus@utsouthwestern.edu
  journal: BMC Bioinformatics
  year: '2015'
  volume: '16'
  issue: '222'
repository: https://bioc-release.r-universe.dev
repository-code: https://github.com/Kraus-Lab/groHMM
commit: dec9b93f8178deeccc0a8f45c89482a19f6b779c
url: https://github.com/Kraus-Lab/groHMM
date-released: '2025-07-24'
contact:
- family-names: Nandu
  given-names: Tulip
  email: tulip.nandu@utsouthwestern.edu