Package 'h5vcData'

Example data for the h5vc package

Description

This package contains the example data needed for the vignettes and examples of the h5vc package.

Details

Package:	h5vcData
Type:	Package
Version:	1.0.0
Date:	2013-10-16
License:	GPL (>= 3)

This package contains the following files in inst/extdata:

example.tally.hfs5: The example HDF5 tally file

NRAS.AML.bam: BAM file containig reads spanning the NRAS locus from an AML sample

NRAS.AML.bam.bai: BAM file index for NRAS.AML.bam

NRAS.Control.bam: BAM file containig reads spanning the NRAS locus from the matched control sample

NRAS.Control.bam.bai: BAM file index for NRAS.Control.bam

Pt*bam: BAM file containing reads spannign DNMT3A locus of cancer or control samples from a total of 6 pairs Pt*bam.bam: Corresponding index files for the set of bam files overlapping the DNMT3A locus

This package contains the following data objects in data:

variantCalls is the data.frame containing a set of example variant calls on the example tally file

Author(s)

Paul Theodor Pyl Maintainer: Paul Theodor Pyl <[email protected]>

See Also

h5vc

Examples

tallyFile <- system.file("extdata", "example.tally.hfs5", package = "h5vcData")
caseBamFile <- system.file("extdata", "NRAS.AML.bam", package = "h5vcData")
controlBamFile <- system.file("extdata", "NRAS.Control.bam", package = "h5vcData")
data( "example.variants", package = "h5vcData" )
head(variantCalls)

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