Package: hmdbQuery 1.32.0

VJ Carey

hmdbQuery: utilities for exploration of human metabolome database

Define utilities for exploration of human metabolome database, including functions to retrieve specific metabolite entries and data snapshots with pairwise associations (metabolite-gene,-protein,-disease).

Authors:Vince Carey <[email protected]>

hmdbQuery_1.32.0.tar.gz
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hmdbQuery_1.32.0.tgz(r-4.6-any)hmdbQuery_1.32.0.tgz(r-4.5-any)
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manual.pdf |manual.html✨
card.svg |card.png
hmdbQuery/json (API)

# Install 'hmdbQuery' in R:
install.packages('hmdbQuery', repos = c('https://bioc-release.r-universe.dev', 'https://cloud.r-project.org'))
Datasets:
  • hmdb_disease - Hmdb_disease: Sept 2017 extract from hmdb.ca of direct disease associations
  • hmdb_gene - Hmdb_gene: Sept 2017 extract from hmdb.ca of direct gene associations
  • hmdb_omim - Hmdb_omim: Sept 2017 extract from hmdb.ca of direct omim associations
  • hmdb_protein - Hmdb_protein: Sept 2017 extract from hmdb.ca of direct protein associations
  • hmdb1 - Hmdb1: demonstration HMDB entry

On CRAN:

Conda:

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

metabolomicsinfrastructure

2.41 score 17 scripts 398 downloads 5 exports 4 dependencies

Last updated from:aa342ce7e9 (on RELEASE_3_23). Checks:9 ERROR, 1 OK. Indexed: no.

TargetResultTimeFilesSyslog
bioc-checksERROR170
linux-devel-x86_64ERROR205
source / vignettesERROR237
linux-release-x86_64ERROR253
macos-release-arm64ERROR116
macos-oldrel-arm64ERROR113
windows-develERROR125
windows-releaseERROR118
windows-oldrelERROR124
wasm-releaseOK143

Exports:biospecimensdiseasesHmdbEntrystoretissues

Dependencies:BiocGenericsgenericsS4VectorsXML