Introduction | Documentation | Requirements | Installation | Usage | Signature | Geneset | Downloading Genesets | Enrichment | Reproducibility | Downstream Methods
Package: hypeR 2.10.0
Andrew Chen
hypeR: An R Package For Geneset Enrichment Workflows
An R Package for Geneset Enrichment Workflows.
Authors:
hypeR_2.10.0.tar.gz
hypeR_2.10.0.zip(r-4.7-any)hypeR_2.10.0.zip(r-4.6-any)hypeR_2.10.0.zip(r-4.5-any)
hypeR_2.10.0.tgz(r-4.6-any)hypeR_2.10.0.tgz(r-4.5-any)
hypeR_2.10.0.tar.gz(r-4.7-any)hypeR_2.10.0.tar.gz(r-4.6-any)
hypeR_2.10.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
hypeR/json (API)
| # Install 'hypeR' in R: |
| install.packages('hypeR', repos = c('https://bioc-release.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/montilab/hyper/issues
On BioConductor:hypeR-2.11.0(bioc 3.24)hypeR-2.10.0(bioc 3.23)
genesetenrichmentannotationpathwaysbioinformaticscomputational-biologygeneset-enrichment-analysis
Last updated from:6ec1e801bf (on RELEASE_3_23). Checks:1 FAILURE, 7 WARNING, 2 OK. Indexed: no.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| bioc-checks | FAILURE | 210 | ||
| linux-devel-x86_64 | WARNING | 450 | ||
| source / vignettes | OK | 299 | ||
| linux-release-x86_64 | WARNING | 449 | ||
| macos-release-arm64 | WARNING | 205 | ||
| macos-oldrel-arm64 | WARNING | 320 | ||
| windows-devel-x86_64 | WARNING | 286 | ||
| windows-release-x86_64 | WARNING | 362 | ||
| windows-oldrel-x86_64 | WARNING | 327 | ||
| wasm-release | OK | 168 |
Exports:clean_genesetsenrichr_availableenrichr_downloadenrichr_gsetsgenesets_Servergenesets_UIggemptyggeplotggvenngsetshyphyp_dotshyp_emaphyp_hmaphyp_showhyp_to_excelhyp_to_graphhyp_to_rmdhyp_to_tablehypeRhyperdb_availablehyperdb_gsetshyperdb_rgsetsmsigdb_availablemsigdb_downloadmsigdb_gsetsmsigdb_infomsigdb_speciesmsigdb_versionmultihyprctbl_buildrctbl_hyprctbl_mhyprgsets
Dependencies:askpassassertthatbabelgenebase64encBiocManagerBiocStylebookdownbslibcachemclicommonmarkcpp11curldigestdplyrevaluatefarverfastmapfontawesomefsgenericsggforceggplot2gluegtablehighrhtmltoolshtmlwidgetshttpuvhttrigraphisobandjquerylibjsonlitekableExtraknitrlabelinglaterlatticelifecyclemagrittrMASSMatrixmemoisemimemsigdbropensslopenxlsxotelpillarpkgconfigplyrpolyclippromisespurrrR6rappdirsRColorBrewerRcppreactablereactRreshape2rlangrmarkdownrstudioapiS7sassscalesshinysourcetoolsstringistringrsvglitesyssystemfontstextshapingtibbletidyselecttinytextweenrutf8vctrsviridisLitevisNetworkwithrxfunxml2xtableyamlzip
