Package: iCARE 1.40.0

Parichoy Pal Choudhury

iCARE: Individualized Coherent Absolute Risk Estimation (iCARE)

An R package to build, validate and apply absolute risk models

Authors:Parichoy Pal Choudhury, Paige Maas, William Wheeler, Nilanjan Chatterjee

iCARE_1.40.0.tar.gz
iCARE_1.40.0.zip(r-4.7-x86_64)iCARE_1.40.0.zip(r-4.6-x86_64)iCARE_1.40.0.zip(r-4.5-x86_64)
iCARE_1.40.0.tgz(r-4.6-x86_64)iCARE_1.40.0.tgz(r-4.6-arm64)iCARE_1.40.0.tgz(r-4.5-x86_64)
iCARE_1.40.0.tar.gz(r-4.7-arm64)iCARE_1.40.0.tar.gz(r-4.7-x86_64)iCARE_1.40.0.tar.gz(r-4.6-arm64)iCARE_1.40.0.tar.gz(r-4.6-x86_64)
iCARE_1.40.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION
card.svg |card.png
iCARE/json (API)

# Install 'iCARE' in R:
install.packages('iCARE', repos = c('https://bioc-release.r-universe.dev', 'https://cloud.r-project.org'))
Datasets:

On BioConductor:iCARE-1.41.0(bioc 3.24)iCARE-1.40.0(bioc 3.23)

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

softwarestatisticalmethodgenomewideassociation

4.78 score 15 scripts 360 downloads 12 mentions 4 exports 57 dependencies

Last updated from:278a074c0d (on RELEASE_3_23). Checks:1 ERROR, 10 WARNING, 2 OK, 1 FAIL. Indexed: no.

TargetResultTimeFilesSyslog
bioc-checksERROR212
linux-devel-arm64WARNING176
linux-devel-x86_64WARNING209
source / vignettesOK302
linux-release-arm64WARNING187
linux-release-x86_64WARNING201
macos-release-arm64WARNING170
macos-release-x86_64WARNING323
macos-oldrel-arm64FAIL84
macos-oldrel-x86_64WARNING277
windows-develWARNING135
windows-releaseWARNING143
windows-oldrelWARNING126
wasm-releaseOK130

Exports:computeAbsoluteRiskcomputeAbsoluteRiskSplitIntervalModelValidationplotModelValidation

Dependencies:backportsbase64encbslibcachemcheckmatecliclustercolorspacecpp11data.tabledigestevaluatefarverfastmapfontawesomeforeignFormulafsggplot2gluegridExtragtablegtoolshighrHmischtmlTablehtmltoolshtmlwidgetsisobandjquerylibjsonliteknitrlabelinglifecyclemagrittrmemoisemimennetplotrixR6rappdirsRColorBrewerrlangrmarkdownrpartrstudioapiS7sassscalesstringistringrtinytexvctrsviridisLitewithrxfunyaml

iCARE Vignette Model Validation
Rendered fromvignette_model_validation.Rnwusingutils::Sweave

Last update: 2019-02-27
Started: 2018-08-17

iCARE Vignette
Rendered fromvignette.Rnwusingutils::Sweave

Last update: 2018-11-28
Started: 2016-01-28

Readme and manuals

Help Manual

Help pageTopics
Data for examplesbc_72_snps bc_data bc_inc bc_model_cov_info bc_model_formula bc_model_log_or bc_model_log_or_post_50 mort_inc new_cov_prof new_snp_prof output ref_cov_dat ref_cov_dat_post_50 validation.cohort.data validation.nested.case.control.data
Building and Applying an Absolute Risk ModelcomputeAbsoluteRisk
Building and Applying an Absolute Risk Model: Compute Risk over Interval Split in Two PartscomputeAbsoluteRiskSplitInterval
A Tool for Individualized Coherent Absolute Risk Estimation (iCARE)iCARE
Model ValidationModelValidation
Model Validation Plotplot plotModelValidation