Package: iCARE 1.40.0
Parichoy Pal Choudhury
iCARE: Individualized Coherent Absolute Risk Estimation (iCARE)
An R package to build, validate and apply absolute risk models
Authors:
iCARE_1.40.0.tar.gz
iCARE_1.40.0.zip(r-4.7-x86_64)iCARE_1.40.0.zip(r-4.6-x86_64)iCARE_1.40.0.zip(r-4.5-x86_64)
iCARE_1.40.0.tgz(r-4.6-x86_64)iCARE_1.40.0.tgz(r-4.6-arm64)iCARE_1.40.0.tgz(r-4.5-x86_64)
iCARE_1.40.0.tar.gz(r-4.7-arm64)iCARE_1.40.0.tar.gz(r-4.7-x86_64)iCARE_1.40.0.tar.gz(r-4.6-arm64)iCARE_1.40.0.tar.gz(r-4.6-x86_64)
iCARE_1.40.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION
card.svg |card.png
iCARE/json (API)
| # Install 'iCARE' in R: |
| install.packages('iCARE', repos = c('https://bioc-release.r-universe.dev', 'https://cloud.r-project.org')) |
Datasets:
- bc_72_snps - Data for examples
- bc_inc - Data for examples
- bc_model_cov_info - Data for examples
- bc_model_formula - Data for examples
- bc_model_log_or - Data for examples
- bc_model_log_or_post_50 - Data for examples
- mort_inc - Data for examples
- new_cov_prof - Data for examples
- new_snp_prof - Data for examples
- output - Data for examples
- ref_cov_dat - Data for examples
- ref_cov_dat_post_50 - Data for examples
- validation.cohort.data - Data for examples
- validation.nested.case.control.data - Data for examples
On BioConductor:iCARE-1.41.0(bioc 3.24)iCARE-1.40.0(bioc 3.23)
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
softwarestatisticalmethodgenomewideassociation
Last updated from:278a074c0d (on RELEASE_3_23). Checks:1 ERROR, 10 WARNING, 2 OK, 3 FAIL. Indexed: no.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| bioc-checks | ERROR | 165 | ||
| linux-devel-arm64 | WARNING | 150 | ||
| linux-devel-x86_64 | WARNING | 240 | ||
| source / vignettes | OK | 311 | ||
| linux-release-arm64 | WARNING | 160 | ||
| linux-release-x86_64 | WARNING | 241 | ||
| macos-release-arm64 | WARNING | 139 | ||
| macos-release-x86_64 | WARNING | 405 | ||
| macos-oldrel-arm64 | FAIL | 78 | ||
| macos-oldrel-x86_64 | WARNING | 267 | ||
| windows-devel-arm64 | FAIL | 155 | ||
| windows-devel-x86_64 | WARNING | 172 | ||
| windows-release-arm64 | FAIL | 151 | ||
| windows-release-x86_64 | WARNING | 145 | ||
| windows-oldrel-x86_64 | WARNING | 143 | ||
| wasm-release | OK | 129 |
Exports:computeAbsoluteRiskcomputeAbsoluteRiskSplitIntervalModelValidationplotModelValidation
Dependencies:backportsbase64encbslibcachemcheckmatecliclustercolorspacecpp11data.tabledigestevaluatefarverfastmapfontawesomeforeignFormulafsggplot2gluegridExtragtablegtoolshighrHmischtmlTablehtmltoolshtmlwidgetsisobandjquerylibjsonliteknitrlabelinglifecyclemagrittrmemoisemimennetplotrixR6rappdirsRColorBrewerrlangrmarkdownrpartrstudioapiS7sassscalesstringistringrtinytexvctrsviridisLitewithrxfunyaml
iCARE Vignette Model Validation
Last update: 2019-02-27
Started: 2018-08-17
iCARE Vignette
Last update: 2018-11-28
Started: 2016-01-28
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Data for examples | bc_72_snps bc_data bc_inc bc_model_cov_info bc_model_formula bc_model_log_or bc_model_log_or_post_50 mort_inc new_cov_prof new_snp_prof output ref_cov_dat ref_cov_dat_post_50 validation.cohort.data validation.nested.case.control.data |
| Building and Applying an Absolute Risk Model | computeAbsoluteRisk |
| Building and Applying an Absolute Risk Model: Compute Risk over Interval Split in Two Parts | computeAbsoluteRiskSplitInterval |
| A Tool for Individualized Coherent Absolute Risk Estimation (iCARE) | iCARE |
| Model Validation | ModelValidation |
| Model Validation Plot | plot plotModelValidation |
