Package: iCOBRA
Type: Package
Title: Comparison and Visualization of Ranking and Assignment Methods
Version: 1.40.0
Date: 2025-12-13
Authors@R: c(person(given = "Charlotte", family = "Soneson", 
    role = c("aut", "cre"),
    email = "charlottesoneson@gmail.com",
    comment = c(ORCID = "0000-0003-3833-2169")))
Description: This package provides functions for calculation and
        visualization of performance metrics for evaluation of ranking
        and binary classification (assignment) methods. Various types
        of performance plots can be generated programmatically. The
        package also contains a shiny application for interactive
        exploration of results.
License: GPL (>=2)
Collate: 'AllGenerics.R' 'COBRAData.R' 'COBRAPerformance.R'
        'COBRAPlot.R' 'calculate_performance.R' 'cobradata_example.R'
        'cobradata_example_sval.R' 'helpers_general.R' 'plot_methods.R'
        'printHead.R' 'shiny.R'
Depends: R (>= 4.4.0)
Imports: shiny (>= 0.9.1.9008), shinydashboard, reshape2, ggplot2 (>=
        3.4.0), scales, ROCR, dplyr, DT, limma, methods, UpSetR, utils,
        rlang, prompter
Suggests: knitr, markdown, rmarkdown, testthat
VignetteBuilder: knitr
biocViews: Classification, Visualization
Encoding: UTF-8
RoxygenNote: 7.3.3
URL: https://csoneson.github.io/iCOBRA/
BugReports: https://github.com/csoneson/iCOBRA/issues
Config/pak/sysreqs: cmake make libicu-dev libuv1-dev zlib1g-dev
Repository: Bioconductor 3.23
Date/Publication: 2026-04-28 12:42:14 UTC
RemoteUrl: https://github.com/bioc/iCOBRA
RemoteRef: RELEASE_3_23
RemoteSha: b16914708d58c5a905baf6c80e431030f754273a
NeedsCompilation: no
Packaged: 2026-10-15 07:11:31 UTC; root
Author: Charlotte Soneson [aut, cre] (ORCID:
    <https://orcid.org/0000-0003-3833-2169>)
Maintainer: Charlotte Soneson <charlottesoneson@gmail.com>