Package: iSEEfier 1.8.0
Najla Abassi
iSEEfier: Streamlining the creation of initial states for starting an iSEE instance
iSEEfier provides a set of functionality to quickly and intuitively create, inspect, and combine initial configuration objects. These can be conveniently passed in a straightforward manner to the function call to launch iSEE() with the specified configuration. This package currently works seamlessly with the sets of panels provided by the iSEE and iSEEu packages, but can be extended to accommodate the usage of any custom panel (e.g. from iSEEde, iSEEpathways, or any panel developed independently by the user).
Authors:
iSEEfier_1.8.0.tar.gz
iSEEfier_1.8.0.zip(r-4.7)iSEEfier_1.8.0.zip(r-4.6)iSEEfier_1.8.0.zip(r-4.5)
iSEEfier_1.8.0.tgz(r-4.6-any)iSEEfier_1.8.0.tgz(r-4.5-any)
iSEEfier_1.8.0.tar.gz(r-4.7-any)iSEEfier_1.8.0.tar.gz(r-4.6-any)
iSEEfier_1.8.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
iSEEfier/json (API)
NEWS
| # Install 'iSEEfier' in R: |
| install.packages('iSEEfier', repos = c('https://bioc-release.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/najlaabassi/iseefier/issues
On BioConductor:iSEEfier-1.9.0(bioc 3.24)iSEEfier-1.8.0(bioc 3.23)
cellbasedassaysclusteringdimensionreductionfeatureextractionguigeneexpressionimmunooncologyshinyappssinglecellsoftwaretranscriptiontranscriptomicsvisualization
Last updated from:0eb49196fa (on RELEASE_3_23). Checks:1 NOTE, 7 WARNING, 2 OK. Indexed: no.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| bioc-checks | NOTE | 278 | ||
| linux-devel-x86_64 | WARNING | 527 | ||
| source / vignettes | OK | 404 | ||
| linux-release-x86_64 | WARNING | 515 | ||
| macos-release-arm64 | WARNING | 432 | ||
| macos-oldrel-arm64 | WARNING | 423 | ||
| windows-devel | WARNING | 1923 | ||
| windows-release | WARNING | 1961 | ||
| windows-oldrel | WARNING | 1785 | ||
| wasm-release | OK | 242 |
Exports:glue_initialsiSEEinitiSEEmarkeriSEEnrichview_initial_networkview_initial_tiles
Dependencies:abindbase64encBiobaseBiocBaseUtilsBiocGenericsbslibcachemcirclizecliclueclustercodetoolscolorspacecolourpickercommonmarkComplexHeatmapcpp11crayoncrosstalkDelayedArraydigestdoParallelDTevaluatefarverfastmapfontawesomeforeachfsgenericsGenomicRangesGetoptLongggplot2ggrepelGlobalOptionsgluegtablehexbinhighrhtmltoolshtmlwidgetshttpuvigraphIRangesiSEEiSEEhexiSEEuisobanditeratorsjquerylibjsonliteknitrlabelinglaterlatticelazyevallifecyclelistviewermagrittrMatrixMatrixGenericsmatrixStatsmemoisemgcvmimeminiUInlmeotelpkgconfigpngpromisesR6rappdirsRColorBrewerRcpprintrojsrjsonrlangrmarkdownS4ArraysS4VectorsS7sassscalesSeqinfoshapeshinyshinyAceshinydashboardshinyjsshinyWidgetsSingleCellExperimentsourcetoolsSparseArraySummarizedExperimenttinytexvctrsviporviridisLitevisNetworkwithrxfunxtableXVectoryaml
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Constant values used throughout iSEEfier | constants-iSEEfier iSEE_panel_colors |
| Glue together initial objects into one | glue_initials |
| iSEEinit: Create an initial state of an iSEE instance for gene expression visualization | iSEEinit |
| iSEEmarker | iSEEmarker |
| iSEEnrich | iSEEnrich |
| View an initial object as a network | view_initial_network |
| View an initial object as a set of tiles | view_initial_tiles |
