Package: iSEEpathways
Title: iSEE extension for panels related to pathway analysis
Version: 1.10.0
Date: 2024-10-01
Authors@R: 
    c(person("Kevin", "Rue-Albrecht", email = "kevinrue67@gmail.com",
             role = c("aut", "cre"),
             comment = c(ORCID = "0000-0003-3899-3872")),
    person("Thomas", "Sandmann", email = "tomsing1@gmail.com",
             role = c("ctb"),
             comment = c(ORCID = "0000-0002-6601-8890")),
    person("Charlotte", "Soneson", role="aut", email="charlottesoneson@gmail.com",
             comment = c(ORCID = '0000-0003-3833-2169')),
    person("Federico", "Marini", role="ctb", email="marinif@uni-mainz.de",
             comment = c(ORCID = '0000-0003-3252-7758')),
    person("Denali Therapeutics", role = c("fnd")))
Description: This package contains diverse functionality to extend the
        usage of the iSEE package, including additional classes for the
        panels or modes facilitating the analysis of pathway analysis
        results. This package does not perform pathway analysis.
        Instead, it provides methods to embed precomputed pathway
        analysis results in a SummarizedExperiment object, in a manner
        that is compatible with interactive visualisation in iSEE
        applications.
License: Artistic-2.0
URL: https://github.com/iSEE/iSEEpathways
BugReports: https://support.bioconductor.org/t/iSEEpathways
biocViews: Software, Infrastructure, DifferentialExpression,
        GeneExpression, GUI, Visualization, Pathways,
        GeneSetEnrichment, GO, ShinyApps
Encoding: UTF-8
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.2.3
Depends: iSEE
Imports: ggplot2, methods, S4Vectors, shiny, shinyWidgets, stats,
        SummarizedExperiment
Suggests: airway, BiocStyle, covr, edgeR, fgsea, GO.db, iSEEde, knitr,
        org.Hs.eg.db, RefManageR, rmarkdown, scater, scuttle,
        sessioninfo, testthat (>= 3.0.0)
Config/testthat/edition: 3
VignetteBuilder: knitr
Config/pak/sysreqs: cmake libglpk-dev make libpng-dev libuv1-dev
        libxml2-dev perl zlib1g-dev
Repository: Bioconductor 3.23
Date/Publication: 2026-04-28 13:01:27 UTC
RemoteUrl: https://github.com/bioc/iSEEpathways
RemoteRef: RELEASE_3_23
RemoteSha: 8457a7639360e2008f36d691b9eff1ee6fc683d1
NeedsCompilation: no
Packaged: 2026-10-11 08:25:31 UTC; root
Author: Kevin Rue-Albrecht [aut, cre] (ORCID:
    <https://orcid.org/0000-0003-3899-3872>),
  Thomas Sandmann [ctb] (ORCID: <https://orcid.org/0000-0002-6601-8890>),
  Charlotte Soneson [aut] (ORCID:
    <https://orcid.org/0000-0003-3833-2169>),
  Federico Marini [ctb] (ORCID: <https://orcid.org/0000-0003-3252-7758>),
  Denali Therapeutics [fnd]
Maintainer: Kevin Rue-Albrecht <kevinrue67@gmail.com>