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# CITATION file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
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cff-version: 1.2.0
message: 'To cite package "ideal" in publications use:'
type: software
license: MIT
title: 'ideal: Interactive Differential Expression AnaLysis'
version: 2.6.0
doi: 10.1186/s12859-020-03819-5
identifiers:
- type: doi
  value: 10.32614/CRAN.package.ideal
abstract: This package provides functions for an Interactive Differential Expression
  AnaLysis of RNA-sequencing datasets, to extract quickly and effectively information
  downstream the step of differential expression. A Shiny application encapsulates
  the whole package. Support for reproducibility of the whole analysis is provided
  by means of a template report which gets automatically compiled and can be stored/shared.
authors:
- family-names: Marini
  given-names: Federico
  email: marinif@uni-mainz.de
  orcid: https://orcid.org/0000-0003-3252-7758
preferred-citation:
  type: article
  title: 'ideal: an R/Bioconductor package for Interactive Differential Expression
    Analysis'
  authors:
  - family-names: Marini
    given-names: Federico
    email: marinif@uni-mainz.de
    orcid: https://orcid.org/0000-0003-3252-7758
  - family-names: Linke
    given-names: Jan
  - family-names: Binder
    given-names: Harald
  journal: BMC Bioinformatics
  volume: '21'
  year: '2020'
  doi: 10.1186/s12859-020-03819-5
  url: https://bioconductor.org/packages/ideal/
  start: '565'
repository: https://bioc-release.r-universe.dev
repository-code: https://github.com/federicomarini/ideal
commit: e02aa3b0838776c126747912e3aec567276b9f50
url: https://federicomarini.github.io/ideal/
date-released: '2024-12-19'
contact:
- family-names: Marini
  given-names: Federico
  email: marinif@uni-mainz.de
  orcid: https://orcid.org/0000-0003-3252-7758
references:
- type: article
  title: Interactive and Reproducible Workflows for Exploring and Modeling RNA-seq
    Data with pcaExplorer, ideal, and GeneTonic
  authors:
  - family-names: Ludt
    given-names: Annekathrin
  - family-names: Ustjanzew
    given-names: Arsenij
  - family-names: Binder
    given-names: Harald
  - family-names: Strauch
    given-names: Konstantin
  - family-names: Marini
    given-names: Federico
  journal: Current Protocols
  volume: '2'
  issue: '4'
  year: '2022'
  month: '4'
  doi: 10.1002/cpz1.411
  start: e411