Package: imageFeatureTCGA
Title: Import features from hovernet, provgigapath into a
        MultiAssayExperiment
Version: 1.0.0
Authors@R: c(
    person("Marcel", "Ramos", , "marcel.ramos@sph.cuny.edu", "aut",
        c(ORCID = "0000-0002-3242-0582", affiliation = 
        "CUNY Graduate School of Public Health and Health Policy,
        New York, NY USA")
    ),
    person("Ilaria", "Billato", , "ilaria.billato@phd.unipd.it",
        c("aut", "cre"), c(ORCID = "0000-0002-3335-3254", 
        affiliation = "Department of Biology, University of Padova")
    ),
    person("Eslam", "Abousamra", role = "aut", comment = c(
        affiliation = "CUNY Graduate School of Public Health and Health Policy,
        New York, NY USA")
    ),
    person("Sehyun", "Oh", , "shbrief@gmail.com", "aut",
        c(ORCID = "0000-0002-9490-3061", affiliation = 
        "CUNY Graduate School of Public Health and Health Policy,
        New York, NY USA")
    ))
Description: The package imports data from HoverNet, and ProvGigaPath
        pipelines. Pipeline output data are hosted in a self-owned
        online repository. Package functionality conveniently
        incorporates pipeline data into existing MultiAssayExperiment
        instances from curatedTCGAData.
Depends: R (>= 4.5.0)
Imports: BiocBaseUtils, BiocFileCache, BiocIO, BumpyMatrix, dplyr,
        httr2, IRanges, methods, readr, rjsoncons, S4Vectors,
        SingleCellExperiment, SpatialExperiment, SummarizedExperiment,
        TCGAutils, TENxIO, tibble, utils
Suggests: AnnotationDbi, anndataR, BiocStyle, BiocParallel, cowplot,
        curatedTCGAData, curl, ggplot2, imageTCGAutils, knitr, png,
        RColorBrewer, rhdf5, rmarkdown, SpatialFeatureExperiment,
        tinytest, yaml
VignetteBuilder: knitr
biocViews: Software, Infrastructure, DataImport, DataRepresentation
BugReports: https://github.com/waldronlab/imageFeatureTCGA/issues
URL: https://github.com/waldronlab/imageFeatureTCGA
License: Artistic-2.0
Encoding: UTF-8
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.3.3
Date: 2026-03-19
Config/pak/sysreqs: make libmagick++-dev gsfonts libbz2-dev libicu-dev
        liblzma-dev libpng-dev libxml2-dev libssl-dev libx11-dev
        xz-utils zlib1g-dev
Repository: Bioconductor 3.23
Date/Publication: 2026-04-28 13:07:05 UTC
RemoteUrl: https://github.com/bioc/imageFeatureTCGA
RemoteRef: RELEASE_3_23
RemoteSha: 39ba8ff843dd3b09f910453b47d36b7b95330cee
NeedsCompilation: no
Packaged: 2026-11-01 17:49:23 UTC; root
Author: Marcel Ramos [aut] (ORCID: <https://orcid.org/0000-0002-3242-0582>,
    affiliation: CUNY Graduate School of Public Health and Health
    Policy, New York, NY USA),
  Ilaria Billato [aut, cre] (ORCID:
    <https://orcid.org/0000-0002-3335-3254>, affiliation: Department of
    Biology, University of Padova),
  Eslam Abousamra [aut] (affiliation: CUNY Graduate School of Public
    Health and Health Policy, New York, NY USA),
  Sehyun Oh [aut] (ORCID: <https://orcid.org/0000-0002-9490-3061>,
    affiliation: CUNY Graduate School of Public Health and Health
    Policy, New York, NY USA)
Maintainer: Ilaria Billato <ilaria.billato@phd.unipd.it>