Package: imageTCGAutils 1.0.0

Ilaria Billato

imageTCGAutils: Utility functions for working with histopathology images

Utility functions for working with CONCH data, listing remote files. One function assigns HoverNet nuclei to ProvGigaPath tiles with a scale factor to align coordinates. Provides internal utility functions for 'imageFeatureTCGA' and most functions are not meant for end users.

Authors:Marcel Ramos [aut], Ilaria Billato [aut, cre], Eslam Abousamra [ctb]

imageTCGAutils_1.0.0.tar.gz
imageTCGAutils_1.0.0.zip(r-4.7)imageTCGAutils_1.0.0.zip(r-4.6)imageTCGAutils_1.0.0.zip(r-4.5)
imageTCGAutils_1.0.0.tgz(r-4.6-any)imageTCGAutils_1.0.0.tgz(r-4.5-any)
imageTCGAutils_1.0.0.tar.gz(r-4.7-any)imageTCGAutils_1.0.0.tar.gz(r-4.6-any)
imageTCGAutils_1.0.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
imageTCGAutils/json (API)
NEWS

# Install 'imageTCGAutils' in R:
install.packages('imageTCGAutils', repos = c('https://bioc-release.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/waldronlab/imagetcgautils/issues

On BioConductor:imageTCGAutils-1.1.0(bioc 3.24)imageTCGAutils-1.0.0(bioc 3.23)

softwareworkflowsteppreprocessing

5.18 score 254 downloads 4 exports 60 dependencies

Last updated from:40b6a03d18 (on RELEASE_3_23). Checks:8 NOTE, 2 OK. Indexed: no.

TargetResultTimeFilesSyslog
bioc-checksNOTE230
linux-devel-x86_64NOTE341
source / vignettesOK383
linux-release-x86_64NOTE310
macos-release-arm64NOTE184
macos-oldrel-arm64NOTE214
windows-develNOTE298
windows-releaseNOTE272
windows-oldrelNOTE258
wasm-releaseOK198

Exports:importCONCHlistHoverNetlistProvGigamatchHoverNetToTiles

Dependencies:abindaskpassBiobaseBiocBaseUtilsBiocFileCacheBiocGenericsbitbit64blobcachemclicpp11curldata.tableDBIdbplyrDelayedArraydplyrfastmapfilelockgenericsGenomicRangesgluehttr2IRangeslatticelifecyclemagickmagrittrMatrixMatrixGenericsmatrixStatsmemoiseopensslpillarpkgconfigpurrrR6rappdirsRcpprjsonrlangRSQLiteS4ArraysS4VectorsSeqinfoSingleCellExperimentSparseArraySpatialExperimentstringistringrSummarizedExperimentsystibbletidyrtidyselectutf8vctrswithrXVector

imageTCGAutils

Ilaria Billato, Eslam Abousamra

Rendered fromimageTCGAutils.Rmdusingknitr::rmarkdownon May 30 2026.

Last update: 2026-04-14
Started: 2026-02-26