Package: ipdDb 1.30.0

Steffen Klasberg

ipdDb: IPD IMGT/HLA and IPD KIR database for Homo sapiens

All alleles from the IPD IMGT/HLA <https://www.ebi.ac.uk/ipd/imgt/hla/> and IPD KIR <https://www.ebi.ac.uk/ipd/kir/> database for Homo sapiens. Reference: Robinson J, Maccari G, Marsh SGE, Walter L, Blokhuis J, Bimber B, Parham P, De Groot NG, Bontrop RE, Guethlein LA, and Hammond JA KIR Nomenclature in non-human species Immunogenetics (2018), in preparation.

Authors:Steffen Klasberg

ipdDb_1.30.0.tar.gz
ipdDb_1.30.0.zip(r-4.7)ipdDb_1.30.0.zip(r-4.6)ipdDb_1.30.0.zip(r-4.5)
ipdDb_1.30.0.tgz(r-4.6-any)ipdDb_1.30.0.tgz(r-4.5-any)
ipdDb_1.30.0.tar.gz(r-4.7-any)ipdDb_1.30.0.tar.gz(r-4.6-any)
ipdDb_1.30.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
ipdDb/json (API)
NEWS

# Install 'ipdDb' in R:
install.packages('ipdDb', repos = c('https://bioc-release.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/dkms-lsl/ipddb/issues

On BioConductor:ipdDb-1.31.0(bioc 3.24)ipdDb-1.30.0(bioc 3.23)

genomicvariationsequencematchingvariantannotationdatarepresentationannotationhubsoftware

3.30 score 4 scripts 338 downloads 11 exports 58 dependencies

Last updated from:6eb06078bb (on RELEASE_3_23). Checks:1 ERROR, 7 NOTE, 2 OK. Indexed: no.

TargetResultTimeFilesSyslog
bioc-checksERROR163
linux-devel-x86_64NOTE254
source / vignettesOK223
linux-release-x86_64NOTE271
macos-release-arm64NOTE264
macos-oldrel-arm64NOTE168
windows-develNOTE387
windows-releaseNOTE309
windows-oldrelNOTE190
wasm-releaseOK122

Exports:columnsgetAllelesgetClosestCompletegetLocigetReferencegetStructurekeyskeytypesloadHlaDataloadKirDataselect

Dependencies:AnnotationDbiAnnotationHubaskpassassertthatBiobaseBiocBaseUtilsBiocFileCacheBiocGenericsBiocManagerBiocVersionBiostringsbitbit64blobcachemclicpp11crayoncurlDBIdbplyrdplyrfastmapfilelockgenericsGenomicRangesgluehttrhttr2IRangesjsonliteKEGGRESTlifecyclemagrittrmemoisemimeopensslpillarpkgconfigpngpurrrR6rappdirsrlangRSQLiteS4VectorsSeqinfostringistringrsystibbletidyrtidyselectutf8vctrswithrXVectoryaml

ipdDb

Steffen Klasberg

Rendered fromReadme.Rmdusingknitr::rmarkdownon May 25 2026.

Last update: 2018-07-05
Started: 2018-07-05

Readme and manuals

Help Manual

Help pageTopics
Get allelesgetAlleles getAlleles,IpdDb-method
Get closest full-length sequencegetClosestComplete getClosestComplete,IpdDb-method
Get locigetLoci getLoci,IpdDb-method
Get reference sequencesgetReference getReference,IpdDb-method
Get gene structuresgetStructure getStructure,IpdDb-method
The database class for storing allele data from IPD..IpdDb columns columns,IpdDb-method IpdDb IpdDb-class keys keys,IpdDb-method keytypes keytypes,IpdDb-method select select,IpdDb-method
Get allele information from IPDipdDbPackage-package ipdDbPackage
Load the IPD IMGT/HLA databaseloadHlaData
Load the IPD KIR databaseloadKirData