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# CITATION file created with {cffr} R package
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cff-version: 1.2.0
message: 'To cite package "jazzPanda" in publications use:'
type: software
license: GPL-3.0-only
title: 'jazzPanda: Finding spatially relevant marker genes in image based spatial
  transcriptomics data'
version: 1.4.0
doi: 10.32614/CRAN.package.jazzPanda
abstract: This package contains the function to find marker genes for image-based
  spatial transcriptomics data. There are functions to create spatial vectors from
  the cell and transcript coordiantes, which are passed as inputs to find marker genes.
  Marker genes are detected for every cluster by two approaches. The first approach
  is by permtuation testing, which is implmented in parallel for finding marker genes
  for one sample study. The other approach is to build a linear model for every gene.
  This approach can account for multiple samples and backgound noise.
authors:
- family-names: Jin
  given-names: Melody
  email: jin.m@wehi.edu.au
  orcid: https://orcid.org/0000-0002-2222-0958
repository: https://bioc-release.r-universe.dev
repository-code: https://github.com/phipsonlab/jazzPanda
commit: 4d9cc3d1532d6be0e7a56bfb95e75b1db9c9f3b5
url: https://bhuvad.github.io/jazzPanda/
date-released: '2025-10-14'
contact:
- family-names: Jin
  given-names: Melody
  email: jin.m@wehi.edu.au
  orcid: https://orcid.org/0000-0002-2222-0958