Package: lumiBarnes 1.52.0

Pan Du

lumiBarnes: Barnes Benchmark Illumina Tissues Titration Data

The Barnes benchmark dataset can be used to evaluate the algorithms for Illumina microarrays. It measured a titration series of two human tissues, blood and placenta, and includes six samples with the titration ratio of blood and placenta as 100:0, 95:5, 75:25, 50:50, 25:75 and 0:100. The samples were hybridized on HumanRef-8 BeadChip (Illumina, Inc) in duplicate. The data is loaded as an LumiBatch Object (see documents in the lumi package).

Authors:Pan Du

lumiBarnes_1.52.0.tar.gz
lumiBarnes_1.52.0.tar.gz(r-4.7-any)lumiBarnes_1.52.0.tar.gz(r-4.6-any)
manual.pdf |manual.html✨
DESCRIPTION
card.svg |card.png
lumiBarnes/json (API)

# Install 'lumiBarnes' in R:

install.packages('lumiBarnes', repos = c('https://bioc-release.r-universe.dev', 'https://cloud.r-project.org'))

Datasets:

lumiBarnes - Barnes Benchmark Illumina Tissues Titration Data

On BioConductor:lumiBarnes-1.53.0(data/experiment 3.24)lumiBarnes-1.52.0(data/experiment 3.23)

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

experimentdata tissue microarraydata chiponchipdata datapkg

2.30 score 1 scripts 0 exports 156 dependencies

Last updated from:1788f8488f (on RELEASE_3_23). Checks:1 ERROR, 3 OK. Indexed: no.

This is a data package. Data packages may be large and do not get checked across all platforms.

Target	Result	Time
bioc-checks	ERROR	213
linux-devel	OK	382
source / vignettes	OK	261
linux-release	OK	431

Exports:

Dependencies:abind affy affyio annotate AnnotationDbi askpass base64 beanplot BH Biobase BiocGenerics BiocIO biocmake BiocManager BiocParallel Biostrings bit bit64 bitops blob bumphunter cachem cigarillo cli clipr codetools cpp11 crayon curl data.table DBI DelayedArray DelayedMatrixStats digest dir.expiry doRNG dplyr farver fastmap FDb.InfiniumMethylation.hg19 filelock foreach formatR futile.logger futile.options genefilter generics GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges GEOquery ggplot2 glue gtable h5mread HDF5Array hms httr httr2 illuminaio IRanges isoband iterators jsonlite KEGGREST KernSmooth labeling lambda.r lattice lifecycle limma locfit lumi magrittr MASS Matrix MatrixGenerics matrixStats mclust memoise methylumi mgcv mime minfi multtest nleqslv nlme nor1mix openssl org.Hs.eg.db pillar pkgconfig plyr png preprocessCore prettyunits progress purrr quadprog R.methodsS3 R.oo R.utils R6 RColorBrewer Rcpp RCurl readr rentrez reshape reshape2 restfulr rhdf5 rhdf5filters Rhdf5lib Rhtslib rjson rlang rngtools Rsamtools RSQLite rtracklayer rvest S4Arrays S4Vectors S7 scales scrime selectr Seqinfo siggenes snow SparseArray sparseMatrixStats statmod stringi stringr SummarizedExperiment survival sys tibble tidyr tidyselect TxDb.Hsapiens.UCSC.hg19.knownGene tzdb UCSC.utils utf8 vctrs viridisLite vroom withr XML xml2 xtable XVector yaml

Help page	Topics
Barnes Benchmark Illumina Tissues Titration Data	lumiBarnes

Package: lumiBarnes 1.52.0

lumiBarnes: Barnes Benchmark Illumina Tissues Titration Data

Citation

Development and contributors

Readme and manuals

Help Manual

Usage by other packages (reverse dependencies)