Package: magpie 1.12.0

Daoyu Duan

magpie: MeRIP-Seq data Analysis for Genomic Power Investigation and Evaluation

This package aims to perform power analysis for the MeRIP-seq study. It calculates FDR, FDC, power, and precision under various study design parameters, including but not limited to sample size, sequencing depth, and testing method. It can also output results into .xlsx files or produce corresponding figures of choice.

Authors:Daoyu Duan [aut, cre], Zhenxing Guo [aut]

magpie_1.12.0.tar.gz
magpie_1.12.0.zip(r-4.7)magpie_1.12.0.zip(r-4.6)magpie_1.12.0.zip(r-4.5)
magpie_1.12.0.tgz(r-4.6-any)magpie_1.12.0.tgz(r-4.5-any)
magpie_1.12.0.tar.gz(r-4.7-any)magpie_1.12.0.tar.gz(r-4.6-any)
magpie_1.12.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
magpie/json (API)
NEWS

# Install 'magpie' in R:
install.packages('magpie', repos = c('https://bioc-release.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/dxd429/magpie/issues

Datasets:
  • power.test - Power calculation results for GSE46705
  • power.test - Power calculation results for GSE46705
  • power.test - Power calculation results for GSE46705
  • power.test - Power calculation results for GSE46705
  • power.test - Power calculation results for GSE46705
  • power.test - Power calculation results for GSE46705

On BioConductor:magpie-1.13.0(bioc 3.24)magpie-1.12.0(bioc 3.23)

epitranscriptomicsdifferentialmethylationsequencingrnaseqsoftware

4.60 score 40 scripts 350 downloads 8 exports 89 dependencies

Last updated from:ebe1945b9f (on RELEASE_3_23). Checks:1 NOTE, 7 WARNING, 2 OK. Indexed: no.

TargetResultTimeFilesSyslog
bioc-checksNOTE247
linux-devel-x86_64WARNING412
source / vignettesOK375
linux-release-x86_64WARNING453
macos-release-arm64WARNING473
macos-oldrel-arm64WARNING231
windows-develWARNING312
windows-releaseWARNING311
windows-oldrelWARNING326
wasm-releaseOK175

Exports:plotAllplotAll_StrataplotResplotStratapowerEvalquickPowerwriteToxlsxwriteToxlsx_strata

Dependencies:abindAnnotationDbiaodaskpassBHBiobaseBiocGenericsBiocIOBiocParallelBiostringsbitbit64bitopsblobcachemcigarilloclicodetoolscpp11crayoncurlDBIDelayedArrayDESeq2farverfastmapformatRfutile.loggerfutile.optionsgenericsGenomicAlignmentsGenomicFeaturesGenomicRangesggplot2gluegtablehttrIRangesisobandjsonliteKEGGRESTlabelinglambda.rlatticelifecyclelocfitmagrittrMatrixMatrixGenericsmatrixStatsmemoisemimeopensslopenxlsxpkgconfigplyrpngR6RColorBrewerRcppRcppArmadilloRCurlreshape2restfulrRhtslibrjsonrlangRsamtoolsRSQLitertracklayerS4ArraysS4VectorsS7scalesSeqinfosnowSparseArraystringistringrSummarizedExperimentsysTRESSvctrsviridisLitewithrXMLXVectoryamlzip

magpie Package User's Guide

Daoyu Duan, Zhenxing Guo

Rendered frommagpie.Rmdusingknitr::rmarkdownon May 31 2026.

Last update: 2023-02-19
Started: 2023-01-13