Package: mammaPrintData 1.48.0

Luigi Marchionni

mammaPrintData: RGLists from the Glas and Buyse breast cancer studies

Gene expression data for the two breast cancer cohorts published by Glas and Buyse in 2006. This cohorts were used to implement and validate the mammaPrint breast cancer test.

Authors:Luigi Marchionni <[email protected]>

mammaPrintData_1.48.0.tar.gz
mammaPrintData_1.48.0.tar.gz(r-4.7-any)mammaPrintData_1.48.0.tar.gz(r-4.6-any)
manual.pdf |manual.html✨
DESCRIPTION
card.svg |card.png
mammaPrintData/json (API)

# Install 'mammaPrintData' in R:

install.packages('mammaPrintData', repos = c('https://bioc-release.r-universe.dev', 'https://cloud.r-project.org'))

Datasets:

buyseRGcy3 - Gene expression, annotations and clinical information for the Buyse cohort: set of dye-swap hybridizations in which the reference RNA was labeled with Cy3
buyseRGcy5 - Gene expression, annotations and clinical information for the Buyse cohort: set of dye-swap hybridizations in which the reference RNA was labeled with Cy5
glasRGcy3 - Gene expression, annotations and clinical information for the Glas cohort: set of dye-swap hybridizations in which the information was associated with RNA samples labeled with Cy3
glasRGcy5 - Gene expression, annotations and clinical information for the Glas cohort: set of dye-swap hybridizations in which the information was associated with RNA samples labeled with Cy5

On BioConductor:mammaPrintData-1.49.1(data/experiment 3.24)mammaPrintData-1.48.0(data/experiment 3.23)

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

experimentdata expressiondata cancerdata breastcancerdata microarraydata twochanneldata datapkg

3.30 score 3 scripts 0 exports 0 dependencies

Last updated from:607f361877 (on RELEASE_3_23). Checks:1 ERROR, 2 NOTE, 1 OK. Indexed: no.

This is a data package. Data packages may be large and do not get checked across all platforms.

Target	Result	Time
bioc-checks	ERROR	118
linux-devel	NOTE	184
source / vignettes	OK	445
linux-release	NOTE	185

Exports:

Dependencies:

Working with the mammaPrintData package

Rendered frommammaPrintData.Rnwusingutils::Sweave

Last update: 2023-04-17
Started: 2013-05-31

Citation

Development and contributors

Readme and manuals

Help Manual

Help page	Topics
Gene expression, annotations and clinical information for the Glas and Buse cohorts	mammaPrintData-package mammaPrintData
Gene expression, annotations and clinical information for the Buyse cohort: set of dye-swap hybridizations in which the reference RNA was labeled with Cy3	buyseRGcy3
Gene expression, annotations and clinical information for the Buyse cohort: set of dye-swap hybridizations in which the reference RNA was labeled with Cy5	buyseRGcy5
Gene expression, annotations and clinical information for the Glas cohort: set of dye-swap hybridizations in which the information was associated with RNA samples labeled with Cy3	glasRGcy3
Gene expression, annotations and clinical information for the Glas cohort: set of dye-swap hybridizations in which the information was associated with RNA samples labeled with Cy5	glasRGcy5