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# CITATION file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
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cff-version: 1.2.0
message: 'To cite package "mariner" in publications use:'
type: software
license: MIT
title: 'mariner: Mariner: Explore the Hi-Cs'
version: 1.12.0
doi: 10.1093/bioinformatics/btae352
identifiers:
- type: doi
  value: 10.32614/CRAN.package.mariner
abstract: Tools for manipulating paired ranges and working with Hi-C data in R. Functionality
  includes manipulating/merging paired regions, generating paired ranges, extracting/aggregating
  interactions from `.hic` files, and visualizing the results. Designed for compatibility
  with plotgardener for visualization.
authors:
- family-names: Davis
  given-names: Eric
  email: ericscottdavis@outlook.com
  orcid: https://orcid.org/0000-0003-4051-3217
- family-names: Parker
  given-names: Sarah
  email: smp3800@gmail.com
  orcid: https://orcid.org/0000-0002-2700-3979
preferred-citation:
  type: article
  title: 'Mariner: Explore the Hi-Cs'
  authors:
  - family-names: Davis
    given-names: Eric S.
  - family-names: Parker
    given-names: Sarah M.
  - family-names: Kramer
    given-names: Nicole E.
  - family-names: Flores
    given-names: J.P.
  - family-names: Kiran
    given-names: Manjari
  - family-names: Phanstiel
    given-names: Douglas H.
  journal: Bioinformatics
  year: '2024'
  url: https://doi.org/10.1093/bioinformatics/btae352
  doi: 10.1093/bioinformatics/btae352
repository: https://bioc-release.r-universe.dev
repository-code: https://github.com/EricSDavis/mariner
commit: 212aa16d75088f8d81cd10a564c91cef524845c6
url: https://ericscottdavis.com/mariner/
date-released: '2026-04-28'
contact:
- family-names: Davis
  given-names: Eric
  email: ericscottdavis@outlook.com
  orcid: https://orcid.org/0000-0003-4051-3217