Package: martini 1.32.0

Hector Climente-Gonzalez

martini: GWAS Incorporating Networks

martini deals with the low power inherent to GWAS studies by using prior knowledge represented as a network. SNPs are the vertices of the network, and the edges represent biological relationships between them (genomic adjacency, belonging to the same gene, physical interaction between protein products). The network is scanned using SConES, which looks for groups of SNPs maximally associated with the phenotype, that form a close subnetwork.

Authors:Hector Climente-Gonzalez [aut, cre], Chloe-Agathe Azencott [aut]

martini_1.32.0.tar.gz
martini_1.32.0.zip(r-4.7)martini_1.32.0.zip(r-4.6)martini_1.32.0.zip(r-4.5)
martini_1.32.0.tgz(r-4.6-x86_64)martini_1.32.0.tgz(r-4.6-arm64)martini_1.32.0.tgz(r-4.5-x86_64)martini_1.32.0.tgz(r-4.5-arm64)
martini_1.32.0.tar.gz(r-4.7-arm64)martini_1.32.0.tar.gz(r-4.7-x86_64)martini_1.32.0.tar.gz(r-4.6-arm64)martini_1.32.0.tar.gz(r-4.6-x86_64)
manual.pdf |manual.html✨
card.svg |card.png
martini/json (API)

# Install 'martini' in R:
install.packages('martini', repos = c('https://bioc-release.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/hclimente/martini/issues

Uses libs:
  • c++– GNU Standard C++ Library v3
Datasets:

On BioConductor:martini-1.33.0(bioc 3.24)martini-1.32.0(bioc 3.23)

softwaregenomewideassociationsnpgeneticvariabilitygeneticsfeatureextractiongraphandnetworknetworkbioinformaticsgenomicsgwasnetwork-analysissnpssystems-biologycpp

6.05 score 4 stars 35 scripts 420 downloads 16 exports 20 dependencies

Last updated from:428b2d4859 (on RELEASE_3_23). Checks:1 WARNING, 11 ERROR, 1 OK, 1 FAIL. Indexed: no.

TargetResultTimeFilesSyslog
bioc-checksWARNING188
linux-devel-arm64ERROR235
linux-devel-x86_64ERROR328
source / vignettesOK229
linux-release-arm64ERROR251
linux-release-x86_64ERROR282
macos-release-arm64ERROR321
macos-release-x86_64ERROR301
macos-oldrel-arm64ERROR148
macos-oldrel-x86_64ERROR330
windows-develERROR412
windows-releaseERROR227
windows-oldrelERROR227
wasm-releaseFAIL146

Exports:get_GI_networkget_GM_networkget_GS_networkldweight_edgesplot_ideogramsconesscones_scones.cvscones.cv_search_conessigmodsigmod_sigmod.cvsigmod.cv_simulate_causal_snpssimulate_phenotype

Dependencies:BiocGenericscachemclicpp11fastmapgenericsglueigraphlatticelifecyclemagrittrMatrixmemoisepkgconfigRcppRcppEigenrlangsnpStatssurvivalvctrs

Running SConES

Héctor Climente-González

Rendered fromscones_usage.Rmdusingknitr::rmarkdownon May 29 2026.

Last update: 2021-03-02
Started: 2017-07-13

Simulating SConES-based phenotypes

Héctor Climente-González

Rendered fromsimulate_phenotype.Rmdusingknitr::rmarkdownon May 29 2026.

Last update: 2021-03-02
Started: 2017-07-13