Package: metagenomeSeq
Title: Statistical analysis for sparse high-throughput sequencing
Version: 1.54.0
Date: 2026-04-08
Author: Joseph Nathaniel Paulson, Nathan D. Olson, Domenick J. Braccia,
        Justin Wagner, Hisham Talukder, Mihai Pop, Hector Corrada Bravo
Maintainer: Joseph N. Paulson <josephpaulson@gmail.com>
Description: metagenomeSeq is designed to determine features (be it
        Operational Taxanomic Unit (OTU), species, etc.) that are
        differentially abundant between two or more groups of multiple
        samples. metagenomeSeq is designed to address the effects of
        both normalization and under-sampling of microbial communities
        on disease association detection and the testing of feature
        correlations.
License: Artistic-2.0
Depends: R(>= 3.0), Biobase, limma, glmnet, methods, RColorBrewer
Suggests: annotate, BiocGenerics, biomformat, knitr, gss, testthat (>=
        0.8), vegan, IHW, SparseArray
Imports: parallel, matrixStats, foreach, Matrix, gplots, graphics,
        grDevices, stats, utils, Wrench
VignetteBuilder: knitr
URL: https://github.com/nosson/metagenomeSeq/
BugReports: https://github.com/nosson/metagenomeSeq/issues
biocViews: ImmunoOncology, Classification, Clustering,
        GeneticVariability, DifferentialExpression, Microbiome,
        Metagenomics, Normalization, Visualization, MultipleComparison,
        Sequencing, Software
RoxygenNote: 7.1.0
Repository: Bioconductor 3.23
Date/Publication: 2026-04-28 12:37:34 UTC
RemoteUrl: https://github.com/bioc/metagenomeSeq
RemoteRef: RELEASE_3_23
RemoteSha: 3472c4adb5191868a97d1260892ed79908ac9c4d
NeedsCompilation: no
Packaged: 2026-07-13 05:46:00 UTC; root