Package: metapone
Type: Package
Title: Conducts pathway test of metabolomics data using a weighted
        permutation test
Version: 1.18.0
Date: 2022-8-20
Authors@R: c(
	person("Leqi", "Tian", role="aut"),
    person("Tianwei", "Yu", role="aut"),
    person("Tianwei", "Yu", email="yutianwei@cuhk.edu.cn", role="cre"))
Description: The package conducts pathway testing from untargetted
        metabolomics data. It requires the user to supply feature-level
        test results, from case-control testing, regression, or other
        suitable feature-level tests for the study design. Weights are
        given to metabolic features based on how many metabolites they
        could potentially match to. The package can combine positive
        and negative mode results in pathway tests.
Depends: R (>= 4.1.0), BiocParallel, fields, markdown, fdrtool, fgsea,
        ggplot2, ggrepel
Imports: methods
biocViews: Technology, MassSpectrometry, Metabolomics, Pathways
License: Artistic-2.0
LazyLoad: yes
NeedsCompilation: no
Suggests: rmarkdown, knitr
VignetteBuilder: knitr
Repository: Bioconductor 3.23
Date/Publication: 2026-04-28 12:56:51 UTC
RemoteUrl: https://github.com/bioc/metapone
RemoteRef: RELEASE_3_23
RemoteSha: 40e2f17287181a83841676a4c1c043d5fdc7ba47
Packaged: 2026-10-18 10:30:15 UTC; root
Author: Leqi Tian [aut],
  Tianwei Yu [aut],
  Tianwei Yu [cre]
Maintainer: Tianwei Yu <yutianwei@cuhk.edu.cn>