Package: methylCC 1.26.0

Stephanie C. Hicks

methylCC: Estimate the cell composition of whole blood in DNA methylation samples

A tool to estimate the cell composition of DNA methylation whole blood sample measured on any platform technology (microarray and sequencing).

Authors:Stephanie C. Hicks [aut, cre], Rafael Irizarry [aut]

methylCC_1.26.0.tar.gz
methylCC_1.26.0.zip(r-4.7-any)methylCC_1.26.0.zip(r-4.6-any)methylCC_1.26.0.zip(r-4.5-any)
methylCC_1.26.0.tgz(r-4.6-any)methylCC_1.26.0.tgz(r-4.5-any)
methylCC_1.26.0.tar.gz(r-4.7-any)methylCC_1.26.0.tar.gz(r-4.6-any)
methylCC_1.26.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
methylCC/json (API)

# Install 'methylCC' in R:
install.packages('methylCC', repos = c('https://bioc-release.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/stephaniehicks/methylcc/issues

Datasets:

On BioConductor:methylCC-1.27.0(bioc 3.24)methylCC-1.26.0(bioc 3.23)

microarraysequencingdnamethylationmethylationarraymethylseqwholegenome

5.68 score 18 stars 22 scripts 596 downloads 2 mentions 2 exports 147 dependencies

Last updated from:d120c4ce26 (on RELEASE_3_23). Checks:1 NOTE, 8 ERROR, 1 OK. Indexed: no.

TargetResultTimeFilesSyslog
bioc-checksNOTE245
linux-develERROR612
source / vignettesERROR489
linux-releaseERROR528
macos-releaseERROR443
macos-oldrelERROR484
windows-develERROR474
windows-releaseERROR514
windows-oldrelERROR456
wasm-releaseOK207

Exports:cell_countsestimatecc

Dependencies:abindannotateAnnotationDbiaskpassassortheadbase64beachmatbeanplotBHBiobaseBiocGenericsBiocIObiocmakeBiocParallelBiostringsbitbit64bitopsblobBSgenomebsseqbumphuntercachemcigarilloclicliprcodetoolscpp11crayoncurldata.tableDBIDelayedArrayDelayedMatrixStatsdigestdir.expirydoRNGdplyrfarverfastmapfilelockFlowSorted.Blood.450kforeachformatRfutile.loggerfutile.optionsgenefiltergenericsGenomicAlignmentsGenomicFeaturesGenomicRangesGEOquerygluegtoolsh5mreadHDF5Arrayhmshttrhttr2IlluminaHumanMethylation450kanno.ilmn12.hg19IlluminaHumanMethylation450kmanifestilluminaioIRangesiteratorsjsonliteKEGGRESTlabelinglambda.rlatticelifecyclelimmalocfitmagrittrMASSMatrixMatrixGenericsmatrixStatsmclustmemoisemimeminfimulttestnlmenor1mixopensslpermutepillarpkgconfigplyrpngpreprocessCoreprettyunitsprogresspurrrquadprogR.methodsS3R.ooR.utilsR6RColorBrewerRcppRCurlreadrrentrezreshaperestfulrrhdf5rhdf5filtersRhdf5libRhtslibrjsonrlangrngtoolsRsamtoolsRSQLitertracklayerrvestS4ArraysS4VectorsscalesscrimeselectrSeqinfosiggenessnowSparseArraysparseMatrixStatsstatmodstringistringrSummarizedExperimentsurvivalsystibbletidyrtidyselecttzdbutf8vctrsviridisLitevroomwithrXMLxml2xtableXVectoryaml