# --------------------------------------------
# CITATION file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
# --------------------------------------------
 
cff-version: 1.2.0
message: 'To cite package "methylGSA" in publications use:'
type: software
license: GPL-2.0-only
title: 'methylGSA: Gene Set Analysis Using the Outcome of Differential Methylation'
version: 1.30.0
doi: 10.1093/bioinformatics/bty892
identifiers:
- type: doi
  value: 10.32614/CRAN.package.methylGSA
abstract: The main functions for methylGSA are methylglm and methylRRA. methylGSA
  implements logistic regression adjusting number of probes as a covariate. methylRRA
  adjusts multiple p-values of each gene by Robust Rank Aggregation. For more detailed
  help information, please see the vignette.
authors:
- family-names: Ren
  given-names: Xu
  email: xuren2120@gmail.com
- family-names: Kuan
  given-names: Pei Fen
  email: peifen.kuan@stonybrook.edu
preferred-citation:
  type: article
  title: 'methylGSA: a Bioconductor package and Shiny app for DNA methylation data
    length bias adjustment in gene set testing'
  authors:
  - family-names: Ren
    given-names: Xu
    email: xuren2120@gmail.com
  - family-names: Kuan
    given-names: Pei Fen
    email: peifen.kuan@stonybrook.edu
  year: '2019'
  journal: Bioinformatics
  doi: 10.1093/bioinformatics/bty892
  volume: '35'
  issue: '11'
  start: '1958'
  end: '1959'
repository: https://bioc-release.r-universe.dev
repository-code: https://github.com/reese3928/methylGSA
commit: d6d2292a619feaf60ebdf04499753519cc8833b5
url: https://github.com/reese3928/methylGSA
date-released: '2026-04-28'
contact:
- family-names: Ren
  given-names: Xu
  email: xuren2120@gmail.com