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cff-version: 1.2.0
message: 'To cite package "methylationArrayAnalysis" in publications use:'
type: software
license: Artistic-2.0
title: 'methylationArrayAnalysis: A cross-package Bioconductor workflow for analysing
  methylation array data'
version: 1.36.1
doi: 10.32614/CRAN.package.methylationArrayAnalysis
abstract: 'Methylation in the human genome is known to be associated with development
  and disease. The Illumina Infinium methylation arrays are by far the most common
  way to interrogate methylation across the human genome. This Bioconductor workflow
  uses multiple packages for the analysis of methylation array data. Specifically,
  we demonstrate the steps involved in a typical differential methylation analysis
  pipeline including: quality control, filtering, normalization, data exploration
  and statistical testing for probe-wise differential methylation. We further outline
  other analyses such as differential methylation of regions, differential variability
  analysis, estimating cell type composition and gene ontology testing. Finally, we
  provide some examples of how to visualise methylation array data.'
authors:
- family-names: Maintainer
  given-names: Jovana Maksimovic
  email: jovana.maksimovic@petermac.org
repository: https://bioconductor.org/
commit: c1e34fbacf73771685eb05ed4a1a4f47ea79a545
date-released: '2026-08-17'
contact:
- family-names: Maintainer
  given-names: Jovana Maksimovic
  email: jovana.maksimovic@petermac.org