Package: miRNAtap 1.46.0
T. Ian Simpson
miRNAtap: miRNAtap: microRNA Targets - Aggregated Predictions
The package facilitates implementation of workflows requiring miRNA predictions, it allows to integrate ranked miRNA target predictions from multiple sources available online and aggregate them with various methods which improves quality of predictions above any of the single sources. Currently predictions are available for Homo sapiens, Mus musculus and Rattus norvegicus (the last one through homology translation).
Authors:
miRNAtap_1.46.0.tar.gz
miRNAtap_1.46.0.zip(r-4.7)miRNAtap_1.46.0.zip(r-4.6)miRNAtap_1.46.0.zip(r-4.5)
miRNAtap_1.46.0.tgz(r-4.6-any)miRNAtap_1.46.0.tgz(r-4.5-any)
miRNAtap_1.46.0.tar.gz(r-4.7-any)miRNAtap_1.46.0.tar.gz(r-4.6-any)
miRNAtap_1.46.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
miRNAtap/json (API)
NEWS
| # Install 'miRNAtap' in R: |
| install.packages('miRNAtap', repos = c('https://bioc-release.r-universe.dev', 'https://cloud.r-project.org')) |
On BioConductor:miRNAtap-1.47.0(bioc 3.24)miRNAtap-1.46.0(bioc 3.23)
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
softwareclassificationmicroarraysequencingmirna
Last updated from:c0d81b5fb4 (on RELEASE_3_23). Checks:1 ERROR, 7 NOTE, 2 OK. Indexed: no.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| bioc-checks | ERROR | 460 | ||
| linux-devel-x86_64 | NOTE | 300 | ||
| source / vignettes | OK | 254 | ||
| linux-release-x86_64 | NOTE | 268 | ||
| macos-release-arm64 | NOTE | 129 | ||
| macos-oldrel-arm64 | NOTE | 177 | ||
| windows-devel | NOTE | 230 | ||
| windows-release | NOTE | 173 | ||
| windows-oldrel | NOTE | 186 | ||
| wasm-release | OK | 179 |
Exports:aggregateRankscolumnsgetPredictedTargetsgetTargetsFromSourcekeyskeytypesselecttranslate
Dependencies:AnnotationDbiaskpassBiobaseBiocGenericsBiostringsbitbit64blobcachemchronclicpp11crayoncurlDBIfastmapgenericsgluegsubfnhttrIRangesjsonliteKEGGRESTlifecyclemagrittrmemoisemimeopensslpkgconfigplyrpngprotoR6RcpprlangRSQLiteS4VectorsSeqinfosqldfstringistringrsysvctrsXVector
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Aggreagate ranks from multiple sources with various methods | aggregateRanks |
| Get aggregated ordered list of predicted targets for miRNA | getPredictedTargets |
| Get target list from a single source | getTargetsFromSource |
| Database class | .MirnaDb columns columns,MirnaDb-method keys keys,MirnaDb-method keytypes keytypes,MirnaDb-method MirnaDb MirnaDb-class select select,MirnaDb-method |
| miRNAtap: microRNA Targets - Aggregated Predictions. | miRNAtap-package miRNAtap |
| Homology transfer for miRNAtap | translate |
