Package: miRSM Type: Package Title: Inferring miRNA sponge modules in heterogeneous data Version: 2.8.2 Authors@R: person(given = "Junpeng", family = "Zhang", role=c("aut", "cre"), email = "zjp@dali.edu.cn") Description: The package aims to identify miRNA sponge or ceRNA modules in heterogeneous data. It provides several functions to study miRNA sponge modules at single-sample and multi-sample levels, including popular methods for inferring gene modules (candidate miRNA sponge or ceRNA modules), and two functions to identify miRNA sponge modules at single-sample and multi-sample levels, as well as several functions to conduct modular analysis of miRNA sponge modules. Depends: R (>= 4.4.0) License: GPL-3 URL: https://github.com/zhangjunpeng411/miRSM Encoding: UTF-8 biocViews: GeneExpression, BiomedicalInformatics, Clustering, GeneSetEnrichment, Microarray, Software, GeneRegulation, GeneTarget RoxygenNote: 8.0.0 Imports: WGCNA, flashClust, dynamicTreeCut, GFA, igraph, RColorBrewer, grid, MCL, fabia, NMF, BicARE, isa2, methods, rJava, Biobase, PMA, stats, dbscan, mclust, SOMbrero, ppclust, Rcpp, utils, SummarizedExperiment, GSEABase, org.Hs.eg.db, clusterProfiler, ReactomePA, DOSE, MatrixCorrelation, energy Suggests: BiocStyle, knitr, rmarkdown, testthat VignetteBuilder: knitr, rmarkdown BugReports: https://github.com/zhangjunpeng411/miRSM/issues Config/pak/sysreqs: libabsl-dev libcairo2-dev cmake libfontconfig1-dev libfreetype6-dev libgdal-dev gdal-bin libgeos-dev libglpk-dev make libgsl0-dev default-jdk libicu-dev libjpeg-dev libpng-dev libuv1-dev libxml2-dev libssl-dev libproj-dev libsqlite3-dev libudunits2-dev zlib1g-dev Repository: Bioconductor 3.23 Date/Publication: 2026-09-05 05:42:11 UTC RemoteUrl: https://github.com/bioc/miRSM RemoteRef: RELEASE_3_23 RemoteSha: 9a5bffa4eee045ad25b59da795ccc402c29274d5 NeedsCompilation: yes Packaged: 2026-10-09 13:05:49 UTC; root Author: Junpeng Zhang [aut, cre] Maintainer: Junpeng Zhang