Package: miRcomp 1.42.0

Matthew N. McCall

miRcomp: Tools to assess and compare miRNA expression estimatation methods

Based on a large miRNA dilution study, this package provides tools to read in the raw amplification data and use these data to assess the performance of methods that estimate expression from the amplification curves.

Authors:Matthew N. McCall <[email protected]>, Lauren Kemperman <[email protected]>

miRcomp_1.42.0.tar.gz
miRcomp_1.42.0.zip(r-4.7)miRcomp_1.42.0.zip(r-4.6)miRcomp_1.42.0.zip(r-4.5)
miRcomp_1.42.0.tgz(r-4.6-any)miRcomp_1.42.0.tgz(r-4.5-any)
miRcomp_1.42.0.tar.gz(r-4.7-any)miRcomp_1.42.0.tar.gz(r-4.6-any)
miRcomp_1.42.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
miRcomp/json (API)
NEWS

# Install 'miRcomp' in R:
install.packages('miRcomp', repos = c('https://bioc-release.r-universe.dev', 'https://cloud.r-project.org'))
Datasets:
  • lifetech - The processed data generated using the LifeTech software.
  • qpcRb4 - The processed data generated using the 4 parameter sigmoidal method from the qpcR software.
  • qpcRb5 - The processed data generated using the 5 parameter sigmodial method from the qpcR software.
  • qpcRdefault - The processed data generated using the default method (4 parameter log-logistic) implemented in the qpcR software package.
  • qpcRl5 - The processed data generated using the 5 parameter log-logistic method from the qpcR software.
  • qpcRlinexp - The processed data generated using the linear-exponential method implemented in the qpcR software package.

On BioConductor:miRcomp-1.43.0(bioc 3.24)miRcomp-1.42.0(bioc 3.23)

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

softwareqpcrpreprocessingqualitycontrol

3.30 score 1 scripts 465 downloads 1 mentions 8 exports 5 dependencies

Last updated from:ea92f31329 (on RELEASE_3_23). Checks:1 ERROR, 9 OK. Indexed: no.

TargetResultTimeFilesSyslog
bioc-checksERROR187
linux-devel-x86_64OK141
source / vignettesOK197
linux-release-x86_64OK182
macos-release-arm64OK135
macos-oldrel-arm64OK108
windows-develOK97
windows-releaseOK118
windows-oldrelOK89
wasm-releaseOK106

Exports:accuracycompleteFeaturesexpressionComplimitOfDetectionmiRcompShinyAppprecisionqualityAssessmenttitrationResponse

Dependencies:BiobaseBiocGenericsgenericsKernSmoothmiRcompData

Assessment and comparison of miRNA expression estimation methods (miRcomp)

Matthew N. McCall

Rendered frommiRcomp.Rmdusingknitr::rmarkdownon Jun 03 2026.

Last update: 2015-10-09
Started: 2015-10-09