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# CITATION file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
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cff-version: 1.2.0
message: 'To cite package "mia" in publications use:'
type: software
license: Artistic-2.0
title: 'mia: Microbiome analysis'
version: 1.20.0
doi: 10.32614/CRAN.package.mia
abstract: mia implements tools for microbiome analysis based on the SummarizedExperiment,
  SingleCellExperiment and TreeSummarizedExperiment infrastructure. Data wrangling
  and analysis in the context of taxonomic data is the main scope. Additional functions
  for common task are implemented such as community indices calculation and summarization.
authors:
- family-names: Borman
  given-names: Tuomas
  email: tuomas.v.borman@utu.fi
  orcid: https://orcid.org/0000-0002-8563-8884
- family-names: Ernst
  given-names: Felix G.M.
  orcid: https://orcid.org/0000-0001-5064-0928
- family-names: Shetty
  given-names: Sudarshan A.
  orcid: https://orcid.org/0000-0001-7280-9915
- family-names: Lahti
  given-names: Leo
  email: leo.lahti@iki.fi
  orcid: https://orcid.org/0000-0001-5537-637X
repository: https://bioc-release.r-universe.dev
repository-code: https://github.com/microbiome/mia
commit: 5c526525b5e81608572210abab4a55cc33d48b50
url: https://microbiome.github.io/mia/
date-released: '2026-04-28'
contact:
- family-names: Borman
  given-names: Tuomas
  email: tuomas.v.borman@utu.fi
  orcid: https://orcid.org/0000-0002-8563-8884