Package: microSTASIS
Title: Microbiota STability ASsessment via Iterative cluStering
Version: 1.12.0
Description: The toolkit 'µSTASIS', or microSTASIS, has been developed
        for the stability analysis of microbiota in a temporal
        framework by leveraging on iterative clustering. Concretely,
        the core function uses Hartigan-Wong k-means algorithm as many
        times as possible for stressing out paired samples from the
        same individuals to test if they remain together for multiple
        numbers of clusters over a whole data set of individuals.
        Moreover, the package includes multiple functions to subset
        samples from paired times, validate the results or visualize
        the output.
Authors@R: c(
    person(given = "Pedro",
           family = "Sánchez-Sánchez",
           role = c("aut", "cre"),
           email = "bio.pedro.technology@gmail.com",
           comment = c(ORCID = "0000-0002-4846-1813")),
    person(given = "Alfonso",
           family = "Benítez-Páez",
           role = c("aut"),
           email = "alfbenpa@gmail.com",
           comment = c(ORCID = "0000-0001-5707-4340")))
License: GPL-3
Imports: BiocParallel, ggplot2, ggside, grid, rlang, stats, stringr,
        TreeSummarizedExperiment
Suggests: BiocStyle, gghighlight, knitr, rmarkdown, methods,
        RefManageR, sessioninfo, SingleCellExperiment,
        SummarizedExperiment, testthat (>= 3.0.0)
biocViews: GeneticVariability, BiomedicalInformatics, Clustering,
        MultipleComparison, Microbiome
BugReports: https://github.com/BiotechPedro/microSTASIS
URL: https://doi.org/10.1093/bib/bbac055
Encoding: UTF-8
LazyData: FALSE
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.2.1
VignetteBuilder: knitr
Depends: R (>= 4.2.0)
Config/testthat/edition: 3
PackageStatus: Deprecated
Config/pak/sysreqs: cmake make libicu-dev libuv1-dev zlib1g-dev
Repository: Bioconductor 3.23
Date/Publication: 2026-04-28 12:59:28 UTC
RemoteUrl: https://github.com/bioc/microSTASIS
RemoteRef: RELEASE_3_23
RemoteSha: 75388f6599b55755ba0fbb69cccf72390516f31f
NeedsCompilation: no
Packaged: 2026-11-01 18:24:03 UTC; root
Author: Pedro Sánchez-Sánchez [aut, cre] (ORCID:
    <https://orcid.org/0000-0002-4846-1813>),
  Alfonso Benítez-Páez [aut] (ORCID:
    <https://orcid.org/0000-0001-5707-4340>)
Maintainer: Pedro Sánchez-Sánchez <bio.pedro.technology@gmail.com>