Package: minfiData 0.58.0

Kasper Daniel Hansen

minfiData: Example data for the Illumina Methylation 450k array

Data from 6 samples across 2 groups from 450k methylation arrays.

Authors:Kasper Daniel Hansen, Martin Aryee, Winston Timp

minfiData_0.58.0.tar.gz
minfiData_0.58.0.tar.gz(r-4.7-any)minfiData_0.58.0.tar.gz(r-4.6-any)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
minfiData/json (API)

# Install 'minfiData' in R:
install.packages('minfiData', repos = c('https://bioc-release.r-universe.dev', 'https://cloud.r-project.org'))
Datasets:
  • MsetEx - An example dataset for Illumina's Human Methylation 450k dataset, after preprocessing.
  • MsetEx.sub - An example dataset for Illumina's Human Methylation 450k dataset, after preprocessing.
  • RGsetEx - An example dataset for Illumina's Human Methylation 450k dataset.
  • RGsetEx.sub - An example dataset for Illumina's Human Methylation 450k dataset.

On BioConductor:minfiData-0.59.0(data/experiment 3.24)minfiData-0.58.0(data/experiment 3.23)

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

homo_sapiens_datamethylationarraydatamicroarraydatadatapkg

4.44 score 1 packages 455 scripts 0 exports 136 dependencies

Last updated from:257138a3d9 (on RELEASE_3_23). Checks:1 ERROR, 2 WARNING, 1 OK. Indexed: no.

TargetResultTimeFilesSyslog
bioc-checksERROR284
linux-develWARNING460
source / vignettesOK589
linux-releaseWARNING548

Exports:

Dependencies:abindannotateAnnotationDbiaskpassbase64beanplotBHBiobaseBiocGenericsBiocIObiocmakeBiocParallelBiostringsbitbit64bitopsblobbumphuntercachemcigarilloclicliprcodetoolscpp11crayoncurldata.tableDBIDelayedArrayDelayedMatrixStatsdigestdir.expirydoRNGdplyrfastmapfilelockforeachformatRfutile.loggerfutile.optionsgenefiltergenericsGenomicAlignmentsGenomicFeaturesGenomicRangesGEOqueryglueh5mreadHDF5Arrayhmshttrhttr2IlluminaHumanMethylation450kanno.ilmn12.hg19IlluminaHumanMethylation450kmanifestilluminaioIRangesiteratorsjsonliteKEGGRESTlambda.rlatticelifecyclelimmalocfitmagrittrMASSMatrixMatrixGenericsmatrixStatsmclustmemoisemimeminfimulttestnlmenor1mixopensslpillarpkgconfigplyrpngpreprocessCoreprettyunitsprogresspurrrquadprogR.methodsS3R.ooR.utilsR6RColorBrewerRcppRCurlreadrrentrezreshaperestfulrrhdf5rhdf5filtersRhdf5libRhtslibrjsonrlangrngtoolsRsamtoolsRSQLitertracklayerrvestS4ArraysS4VectorsscrimeselectrSeqinfosiggenessnowSparseArraysparseMatrixStatsstatmodstringistringrSummarizedExperimentsurvivalsystibbletidyrtidyselecttzdbutf8vctrsvroomwithrXMLxml2xtableXVectoryaml