Package 'minfiDataEPIC'

Title: Example data for the Illumina Methylation EPIC array
Description: Data from 3 technical replicates of the cell line GM12878 from the EPIC methylation array.
Authors: Jean-Philippe Fortin, Kasper Daniel Hansen
Maintainer: Kasper Daniel Hansen <[email protected]>
License: Artistic-2.0
Version: 1.38.0
Built: 2026-10-10 11:15:07 UTC
Source: https://github.com/bioc/minfiDataEPIC

Help Index

An example dataset for Illumina's Human Methylation EPIC dataset, after preprocessing.

Description

This contains the raw data for 3 technical replicates of the cell line GM12878 from the Illumina's Human Methylation EPIC platform. The data has been preprocessed with preprocessRaw.

Usage

data(MsetEPIC)

Format

An object of class "MethylSet"

Details

Scripts for creating the object is found in the scripts directory of the package and extdata contains the IDAT files. The data has been preprocessed using preprocessRaw.

See Also

MethylSet for the class definition, preprocessRaw for the preprocessing function, RGsetEPIC for the companion raw data.

Examples

data(MsetEPIC)
    pData(MsetEPIC)

An example dataset for the Illumina's Human Methylation EPIC platform.

Description

This contains the raw data for 3 technical replicates of the cell line GM12878 from the Illumina's Human Methylation EPIC platform.

Usage

data(RGsetEPIC)

Format

An object of class "RGChannelSet"

Details

Scripts for creating the object is found in the scripts directory of the package and extdata contains the IDAT files.

See Also

RGChannelSet for the class definition, MsetEPIC for the comparion preprocessed data.

Examples

data(RGsetEPIC)
    pData(RGsetEPIC)