Package: missRows 1.32.0

Gonzalez Ignacio

missRows: Handling Missing Individuals in Multi-Omics Data Integration

The missRows package implements the MI-MFA method to deal with missing individuals ('biological units') in multi-omics data integration. The MI-MFA method generates multiple imputed datasets from a Multiple Factor Analysis model, then the yield results are combined in a single consensus solution. The package provides functions for estimating coordinates of individuals and variables, imputing missing individuals, and various diagnostic plots to inspect the pattern of missingness and visualize the uncertainty due to missing values.

Authors:Ignacio Gonzalez and Valentin Voillet

missRows_1.32.0.tar.gz
missRows_1.32.0.zip(r-4.7-any)missRows_1.32.0.zip(r-4.6-any)missRows_1.32.0.zip(r-4.5-any)
missRows_1.32.0.tgz(r-4.6-any)missRows_1.32.0.tgz(r-4.5-any)
missRows_1.32.0.tar.gz(r-4.7-any)missRows_1.32.0.tar.gz(r-4.6-any)
missRows_1.32.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
missRows/json (API)

# Install 'missRows' in R:
install.packages('missRows', repos = c('https://bioc-release.r-universe.dev', 'https://cloud.r-project.org'))
Datasets:
  • NCI60 - Data of the NCI-60 Cell Lines with Missing Individuals

On BioConductor:missRows-1.33.0(bioc 3.24)missRows-1.32.0(bioc 3.23)

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

softwarestatisticalmethoddimensionreductionprincipalcomponentmathematicalbiologyvisualization

2.30 score 5 scripts 460 downloads 12 exports 50 dependencies

Last updated from:e2bb57eb96 (on RELEASE_3_23). Checks:2 ERROR, 7 WARNING, 1 OK. Indexed: no.

TargetResultTimeFilesSyslog
bioc-checksERROR172
linux-develWARNING296
source / vignettesERROR3215
linux-releaseWARNING303
macos-releaseWARNING219
macos-oldrelWARNING209
windows-develWARNING219
windows-releaseWARNING219
windows-oldrelWARNING216
wasm-releaseOK97

Exports:compromiseconfigurationsimputedDataimputedIndvMIDTListMIMFAMIparammissingIndvmissPatternplotIndplotVartuneM

Dependencies:abindBiobaseBiocBaseUtilsBiocGenericsclicpp11DelayedArraydplyrfarvergenericsGenomicRangesggplot2gluegtablegtoolsIRangesisobandlabelinglatticelifecyclemagrittrMatrixMatrixGenericsmatrixStatsMultiAssayExperimentpillarpkgconfigplyrpurrrR6RColorBrewerRcpprlangS4ArraysS4VectorsS7scalesSeqinfoSparseArraystringistringrSummarizedExperimenttibbletidyrtidyselectutf8vctrsviridisLitewithrXVector