Package: mitology 1.4.0

Stefania Pirrotta

mitology: Study of mitochondrial activity from RNA-seq data

mitology allows to study the mitochondrial activity throught high-throughput RNA-seq data. It is based on a collection of genes whose proteins localize in to the mitochondria. From these, mitology provides a reorganization of the pathways related to mitochondria activity from Reactome and Gene Ontology. Further a ready-to-use implementation of MitoCarta3.0 pathways is included.

Authors:Stefania Pirrotta [cre, aut], Enrica Calura [aut, fnd]

mitology_1.4.0.tar.gz
mitology_1.4.0.zip(r-4.7)mitology_1.4.0.zip(r-4.6)mitology_1.4.0.zip(r-4.5)
mitology_1.4.0.tgz(r-4.6-any)mitology_1.4.0.tgz(r-4.5-any)
mitology_1.4.0.tar.gz(r-4.7-any)mitology_1.4.0.tar.gz(r-4.6-any)
mitology_1.4.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
mitology/json (API)
NEWS

# Install 'mitology' in R:
install.packages('mitology', repos = c('https://bioc-release.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/caluralab/mitology/issues

Datasets:

On BioConductor:mitology-1.5.0(bioc 3.24)mitology-1.4.0(bioc 3.23)

geneexpressionrnaseqvisualizationsinglecellspatialpathwaysreactomego

4.60 score 2 stars 5 scripts 282 downloads 6 exports 145 dependencies

Last updated from:a7ed717d4d (on RELEASE_3_23). Checks:1 NOTE, 9 OK. Indexed: no.

TargetResultTimeFilesSyslog
bioc-checksNOTE282
linux-devel-x86_64OK452
source / vignettesOK512
linux-release-x86_64OK432
macos-release-arm64OK217
macos-oldrel-arm64OK709
windows-develOK361
windows-releaseOK336
windows-oldrelOK340
wasm-releaseOK305

Exports:enrichMitogetGeneSetsgseaMitomitoHeatmapmitoTreeHeatmapmitoTreePoint

Dependencies:aisdkAnnotationDbiapeaplotaskpassbase64encBiobaseBiocGenericsBiostringsbitbit64blobbslibcachemcallrcirclizecliclueclusterclusterProfilercodetoolscolorspaceComplexHeatmapcpp11crayoncurlDBIdigestdir.expirydoParallelDOSEdplyrenrichitenrichplotevaluatefarverfastmapfilelockfontawesomefontBitstreamVerafontLiberationfontquiverforeachfsgdtoolsgenericsGetoptLongggforceggfunggiraphggnewscaleggplot2ggplotifyggraphggrepelggtangleggtreeGlobalOptionsglueGO.dbGOSemSimgraphgraphitegraphlayoutsgridExtragridGraphicsgsongtablehighrhtmltoolshtmlwidgetshttrhttr2igraphIRangesisobanditeratorsjquerylibjsonliteKEGGRESTknitrlabelinglatticelazyevallifecyclemagrittrMASSMatrixmatrixStatsmemoisemimenlmeopensslorg.Hs.eg.dbpatchworkpillarpkgconfigplyrpngpolyclipprocessxpspurrrqvalueR6rappdirsRColorBrewerRcppRcppArmadilloreactome.dbReactomePAreshape2rjsonrlangrmarkdownRSQLiteS4VectorsS7sassscalesscatterpieSeqinfoshapestringistringrsyssystemfontstibbletidydrtidygraphtidyrtidyselecttidytreetinytextreeiotweenrutf8vctrsviridisviridisLitewithrxfunXVectoryamlyulab.utils

mitology vignette

Stefania Pirrotta

Rendered frommitology.Rmdusingknitr::rmarkdownon May 29 2026.

Last update: 2025-10-20
Started: 2021-05-18