# --------------------------------------------
# CITATION file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
# --------------------------------------------
 
cff-version: 1.2.0
message: 'To cite package "monaLisa" in publications use:'
type: software
license: GPL-3.0-or-later
title: 'monaLisa: Binned Motif Enrichment Analysis and Visualization'
version: 1.18.0
doi: 10.1093/bioinformatics/btac102
identifiers:
- type: doi
  value: 10.32614/CRAN.package.monaLisa
- type: url
  value: https://fmicompbio.github.io/monaLisa/
abstract: Useful functions to work with sequence motifs in the analysis of genomics
  data. These include methods to annotate genomic regions or sequences with predicted
  motif hits and to identify motifs that drive observed changes in accessibility or
  expression. Functions to produce informative visualizations of the obtained results
  are also provided.
authors:
- family-names: Machlab
  given-names: Dania
  email: dania.machlab@gmail.com
  orcid: https://orcid.org/0000-0002-2578-6930
- family-names: Burger
  given-names: Lukas
  email: lukas.burger@fmi.ch
  orcid: https://orcid.org/0000-0001-5596-7567
- family-names: Soneson
  given-names: Charlotte
  email: charlottesoneson@gmail.com
  orcid: https://orcid.org/0000-0003-3833-2169
- family-names: Stadler
  given-names: Michael
  email: michael.stadler@fmi.ch
  orcid: https://orcid.org/0000-0002-2269-4934
preferred-citation:
  type: article
  title: 'monaLisa: an R/Bioconductor package for identifying regulatory motifs'
  authors:
  - family-names: Machlab
    given-names: Dania
    email: dania.machlab@gmail.com
    orcid: https://orcid.org/0000-0002-2578-6930
  - family-names: Burger
    given-names: Lukas
    email: lukas.burger@fmi.ch
    orcid: https://orcid.org/0000-0001-5596-7567
  - family-names: Soneson
    given-names: Charlotte
    email: charlottesoneson@gmail.com
    orcid: https://orcid.org/0000-0003-3833-2169
  - family-names: Rijli
    given-names: Filippo M
  - family-names: Schübeler
    given-names: Dirk
  - family-names: Stadler
    given-names: Michael B
  journal: Bioinformatics
  volume: '38'
  issue: '9'
  year: '2022'
  doi: 10.1093/bioinformatics/btac102
  start: 2624-2625
repository: https://bioc-release.r-universe.dev
repository-code: https://github.com/fmicompbio/monaLisa
commit: b5b10d4e3f037d300726268389b95edb47d55b1a
url: https://bioconductor.org/packages/monaLisa/
date-released: '2026-04-28'
contact:
- family-names: Stadler
  given-names: Michael
  email: michael.stadler@fmi.ch
  orcid: https://orcid.org/0000-0002-2269-4934