Package: motifTestR
Title: Perform key tests for binding motifs in sequence data
Version: 1.8.1
Authors@R: person("Stevie", "Pederson", 
  email = "stephen.pederson.au@gmail.com", 
  role = c("aut", "cre"),
  comment = c(ORCID = "0000-0001-8197-3303")
  )
Description: Taking a set of sequence motifs as PWMs, test a set of
        sequences for over-representation of these motifs, as well as
        any positional features within the set of motifs. Enrichment
        analysis can be undertaken using multiple statistical
        approaches. The package also contains core functions to prepare
        data for analysis, and to visualise results.
License: GPL-3
Encoding: UTF-8
URL: https://github.com/smped/motifTestR
BugReports: https://github.com/smped/motifTestR/issues
Depends: Biostrings, GenomicRanges, ggplot2 (>= 4.0.0), R (>= 4.5.0),
Imports: Seqinfo, graphics, harmonicmeanp, IRanges, matrixStats,
        methods, parallel, patchwork, rlang, S4Vectors, stats,
        universalmotif,
Suggests: AnnotationHub, BiocStyle, BSgenome.Hsapiens.UCSC.hg19,
        extraChIPs (>= 1.13.3), ggdendro, knitr, MASS, MotifDb,
        rmarkdown, rtracklayer, SimpleUpset, testthat (>= 3.0.0), VGAM
biocViews: MotifAnnotation, ChIPSeq, ChipOnChip, SequenceMatching,
        Software
LazyData: false
Roxygen: list(markdown = TRUE)
Config/testthat/edition: 3
VignetteBuilder: knitr
Config/roxygen2/version: 8.0.0
Config/pak/sysreqs: zlib1g-dev
Repository: Bioconductor 3.23
Date/Publication: 2026-06-30 01:57:03 UTC
RemoteUrl: https://github.com/bioc/motifTestR
RemoteRef: RELEASE_3_23
RemoteSha: 28e228623942375936e8f68d6251dcb45d928ed8
NeedsCompilation: no
Packaged: 2026-09-28 07:39:19 UTC; root
Author: Stevie Pederson [aut, cre] (ORCID:
    <https://orcid.org/0000-0001-8197-3303>)
Maintainer: Stevie Pederson <stephen.pederson.au@gmail.com>